Absolute Quantification of Individual Biomass Concentrations in a Methanogenic Coculture

Absolute Quantification of Individual Biomass Concentrations in a Methanogenic Coculture

Junicke, H.
Abbas, B.
Oentoro, J.
Van Loosdrecht, M.
Kleerebezem, R.

Applied Sciences

BT/Biotechnology

2014-04-12

Identification of individual biomass concentrations is a crucial step towards an improved understanding of anaerobic digestion processes and mixed microbial conversions in general. The knowledge of individual biomass concentrations allows for the calculation of biomass specific conversion rates which form the basis of anaerobic digestion models. Only few attempts addressed the absolute quantification of individual biomass concentrations in methanogenic microbial ecosystems which has so far impaired the calculation of biomass specific conversion rates and thus model validation. This study proposes a quantitative PCR (qPCR) approach for the direct determination of individual biomass concentrations in methanogenic microbial associations by correlating the native qPCR signal (cycle threshold, Ct) to individual biomass concentrations (mg dry matter/L). Unlike existing methods, the proposed approach circumvents error-prone conversion factors that are typically used to convert gene copy numbers or cell concentrations into actual biomass concentrations. The newly developed method was assessed and deemed suitable for the determination of individual biomass concentrations in a defined coculture of Desulfovibrio sp. G11 and Methanospirillum hungatei JF1. The obtained calibration curves showed high accuracy, indicating that the new approach is well suited for any engineering applications where the knowledge of individual biomass concentrations is required.

anaerobic digestion
qPCR
individual biomass concentration
biomass specific conversion rates
OA-Fund TU Delft

http://resolver.tudelft.nl/uuid:6ee66bd6-99e2-4fb5-b622-c3918244e346

https://doi.org/10.1186/s13568-014-0035-x

SpringerOpen

2191-0855

http://www.amb-express.com/content/4/1/35

AMB Express, 4, 2014

Institutional Repository

journal article

© 2014 The Author(s); licensee Springer
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