"uuid","repository link","title","author","contributor","publication year","abstract","subject topic","language","publication type","publisher","isbn","issn","patent","patent status","bibliographic note","access restriction","embargo date","faculty","department","research group","programme","project","coordinates"
"uuid:4f6d060d-1805-4f81-87ea-dec4f3a4ccd5","http://resolver.tudelft.nl/uuid:4f6d060d-1805-4f81-87ea-dec4f3a4ccd5","ForceTracker: A versatile tool for contractile force assessment in 3D organ-on-chip platforms","Rivera-Arbelaez, J.M. (University of Twente); Dostanic, M. (TU Delft Electronic Components, Technology and Materials); Stein, J.M. (Leiden University Medical Center); van den Berg, A. (University of Twente); Segerink, L.I. (University of Twente); Mummery, C.L. (Leiden University Medical Center; University of Twente); Sarro, Pasqualina M (TU Delft Electronic Components, Technology and Materials); Mastrangeli, Massimo (TU Delft Electronic Components, Technology and Materials); Ribeiro, M.C. (University of Twente; River BioMedics); Passier, R. (University of Twente; Leiden University Medical Center)","","2021","","","en","poster","","","","","","","","","","","Electronic Components, Technology and Materials","","",""
"uuid:594e5344-dfe1-40ef-9927-f13f8be827ff","http://resolver.tudelft.nl/uuid:594e5344-dfe1-40ef-9927-f13f8be827ff","Predicting functional effect of human missense mutations","van den Berg, B.A. (TU Delft Pattern Recognition and Bioinformatics; Netherlands Bioinformatics Centre, Nijmegen; Kluyver Centre for Genomics of Industrial Fermentation); Thornton, JM (European Bioinformatics Institute, Cambridge); Reinders, M.J.T. (TU Delft Pattern Recognition and Bioinformatics; Netherlands Bioinformatics Centre, Nijmegen; Kluyver Centre for Genomics of Industrial Fermentation); de Ridder, D. (TU Delft Pattern Recognition and Bioinformatics; Netherlands Bioinformatics Centre, Nijmegen; Kluyver Centre for Genomics of Industrial Fermentation); Beer, TAP (European Bioinformatics Institute, Cambridge)","","2013","Our aim is to prioritize human missense mutations by their probability of being disease causing. Such a computational method could be used to obtain a reduced set of mutations with a relatively large fraction of disease related mutations, thereby aiding in the search for this type of mutation within a large mutation set.
Whereas a range of methods is available for this purpose, only few employ the availability of the 1000G data to obtain a set of neutral mutations. The novelty of our approach is the use of separate classifiers that were trained on a subset of mutations from one amino acid to any other amino acid. The combined performance of these classifiers show an improved performance compared to the often used prediction method PolyPhen2.","","en","poster","","","","","","","","","","","Pattern Recognition and Bioinformatics","","",""
"uuid:aca796c7-513e-47ec-8e5c-409f6d395594","http://resolver.tudelft.nl/uuid:aca796c7-513e-47ec-8e5c-409f6d395594","Proposal for an enzyme redesign method to improve production rates in Aspergillus niger","van den Berg, B.A. (TU Delft Pattern Recognition and Bioinformatics; Netherlands Bioinformatics Centre, Nijmegen; Kluyver Centre for Genomics of Industrial Fermentation); Reinders, M.J.T. (TU Delft Pattern Recognition and Bioinformatics; Netherlands Bioinformatics Centre, Nijmegen; Kluyver Centre for Genomics of Industrial Fermentation); Pel, HJ (DSM); Roubos, J.A. (DSM); de Ridder, D. (TU Delft Pattern Recognition and Bioinformatics; Netherlands Bioinformatics Centre, Nijmegen; Kluyver Centre for Genomics of Industrial Fermentation)","","2012","","","en","poster","","","","","","","","","","","Pattern Recognition and Bioinformatics","","",""
"uuid:07c6913d-36ab-4b17-a3ed-a923c7895503","http://resolver.tudelft.nl/uuid:07c6913d-36ab-4b17-a3ed-a923c7895503","Relating sequence properties to protein secretion","van den Berg, B.A. (TU Delft Pattern Recognition and Bioinformatics; Netherlands Bioinformatics Centre, Nijmegen; Kluyver Centre for Genomics of Industrial Fermentation); Reinders, M.J.T. (TU Delft Pattern Recognition and Bioinformatics; Netherlands Bioinformatics Centre, Nijmegen; Kluyver Centre for Genomics of Industrial Fermentation); Pel, HJ (DSM); Wu, L (DSM); Roubos, J.A. (DSM); de Ridder, D. (TU Delft Pattern Recognition and Bioinformatics; Netherlands Bioinformatics Centre, Nijmegen; Kluyver Centre for Genomics of Industrial Fermentation)","","2011","Aspergillus niger is widely used for industrial enzyme production. Knowledge on high-level protein secretion could be useful to improve production rates. We used sequencebased classification methods to identify important properties
for successful high-level secretion, which will be used to redesign proteins for improved secretion.","","en","poster","","","","","","","","","","","Pattern Recognition and Bioinformatics","","",""
"uuid:c690a3b0-7427-446e-b1f2-0c6ca946e721","http://resolver.tudelft.nl/uuid:c690a3b0-7427-446e-b1f2-0c6ca946e721","Logic gene network design: a software tool based on modularity and standardization","van den Berg, B.A. (TU Delft Pattern Recognition and Bioinformatics); Reinders, M.J.T. (TU Delft Pattern Recognition and Bioinformatics; Kluyver Centre for Genomics of Industrial Fermentation); Bellomo, Domenico (Kluyver Centre for Genomics of Industrial Fermentation)","","2009","","","en","poster","","","","","","","","","","","Pattern Recognition and Bioinformatics","","",""