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StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communitiesvan Dijk, L.R. (author), Walker, Bruce J. (author), Straub, Timothy J. (author), Worby, Colin J. (author), Grote, Alexandra (author), Schreiber, Henry L. (author), Anyansi, C.A. (author), Pickering, Amy J. (author), Hultgren, Scott J. (author), Manson, Abigail L. (author), Abeel, T.E.P.M.F. (author), Earl, Ashlee M. (author)Human-associated microbial communities comprise not only complex mixtures of bacterial species, but also mixtures of conspecific strains, the implications of which are mostly unknown since strain level dynamics are underexplored due to the difficulties of studying them. We introduce the Strain Genome Explorer (StrainGE) toolkit, which...journal article 2022
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El Abbassi, M. (author), Perrin, M.L. (author), Barin, Gabriela Borin (author), Sangtarash, Sara (author), Overbeck, Jan (author), Braun, Oliver (author), Lambert, Colin J. (author), Sun, Qiang (author), Prechtl, Thorsten (author)Graphene nanoribbons (GNRs) have attracted strong interest from researchers worldwide, as they constitute an emerging class of quantum-designed materials. The major challenges toward their exploitation in electronic applications include reliable contacting, complicated by their small size (<50 nm), and the preservation of their physical...journal article 2020
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Hamidjaja, Raditijo (author), Capoulade, J. (author), Catón, Laura (author), Ingham, Colin J. (author)Flavobacterium IR1 is a gliding bacterium with a high degree of colonial organization as a 2D photonic crystal, resulting in vivid structural coloration when illuminated. Enterobacter cloacae B12, an unrelated bacterium, was isolated from the brown macroalga Fucus vesiculosus from the same location as IR1. IR1 was found to be a predator of...journal article 2020
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Lee, D. (author), Pietrzyk, P. (author), Donkers, S. (author), Liem, V. (author), van Oostveen, J. (author), Montazeri, S. (author), Boeters, R. (author), Colin, J. (author), Kastendeuch, P. (author), Nerry, F. (author), Menenti, M. (author), Gorte, B.G.H. (author), Verbree, E. (author)The impact of 3D geometry complexity on the accuracy of simulating radiative, convective and conductive fluxes in an urban canyon was explored. The research involved the collection of meteorological data in an urban canyon in the city of Strasbourg, France, for input into a 3D model called LASER/F, which simulates the aforementioned fluxes. The...conference paper 2013
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- Colin, J. (author), Faivre, R. (author) journal article 2010