CIM-architecture for acceleration of DNA pre-alignment filters

Due to recent developments in DNA sequencing technology, there is a growing abundance of available genomic data. To process this information for use in fields such as healthcare and forensics, raw sequencing data have to be processed using computationally intensive algorithms. Currently, one of the major bottlenecks in this processing pipeline...

SieveMem: A Computation-in-Memory Architecture for Fast and Accurate Pre-Alignment

The high execution time of DNA sequence alignment negatively affects many genomic studies that rely on sequence alignment results. Pre-alignment filtering was introduced as a step before alignment to reduce the execution time of short-read sequence alignment greatly. With its success, i.e., achieving high accuracy and thus removing...

Autonomous Temperature Sensor for Smart Agriculture: Smart Measurement and Control

Fruit-frost during spring is one of the main causes of damage to the harvest of fruit in orchards. Various systems using different methods of preventing spring-frost are available on the market. To determine when these systems should be activated, the temperature in the orchard needs to be determined. In this project, a self-sustaining...