Searched for: author%3A%22Poot%2C+D.H.J.%22
(1 - 18 of 18)
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Nunez-Gonzalez, L. (author), Nagtegaal, M.A. (author), Poot, D.H.J. (author), de Bresser, J. (author), van Osch, M. J.P. (author), Hernandez-Tamames, J.A. (author), Vos, F.M. (author)
MR fingerprinting (MRF) is a promising method for quantitative characterization of tissues. Often, voxel-wise measurements are made, assuming a single tissue-type per voxel. Alternatively, the Sparsity Promoting Iterative Joint Non-negative least squares Multi-Component MRF method (SPIJN-MRF) facilitates tissue parameter estimation for...
journal article 2022
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Huizinga, W. (author), Poot, D.H.J. (author), Vinke, E. J. (author), Wenzel, F. (author), Bron, E. E. (author), Ikram, M. A. (author), Niessen, W.J. (author), Vernooij, M.N.A. (author), Klein, S. (author)
For the segmentation of magnetic resonance brain images into anatomical regions, numerous fully automated methods have been proposed and compared to reference segmentations obtained manually. However, systematic differences might exist between the resulting segmentations, depending on the segmentation method and underlying brain atlas. This...
journal article 2021
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Sabidussi, E. R. (author), Klein, S. (author), Caan, M. W.A. (author), Bazrafkan, S. (author), den Dekker, A. J. (author), Sijbers, J. (author), Niessen, W.J. (author), Poot, D.H.J. (author)
In this paper, we propose the use of Recurrent Inference Machines (RIMs) to perform T<sub>1</sub> and T<sub>2</sub> mapping. The RIM is a neural network framework that learns an iterative inference process based on the signal model, similar to conventional statistical methods for quantitative MRI (QMRI), such as the Maximum Likelihood...
journal article 2021
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Cremers, Lotte G.M. (author), Huizinga, Wyke (author), Niessen, W.J. (author), Krestin, Gabriel P. (author), Poot, D.H.J. (author), Ikram, M. Arfan (author), Lötjönen, Jyrki (author), Klein, S. (author), Vernooij, Meike W. (author)
Background: Identifying persons at risk for cognitive decline may aid in early detection of persons at risk of dementia and to select those that would benefit most from therapeutic or preventive measures for dementia. Objective: In this study we aimed to validate whether cognitive decline in the general population can be predicted with...
journal article 2020
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van Valenberg, W. (author), Klein, S. (author), Vos, F.M. (author), Koolstra, Kirsten (author), van Vliet, L.J. (author), Poot, D.H.J. (author)
Quantitative MRI methods that estimate multiple physical parameters simultaneously often require the fitting of a computational complex signal model defined through the Bloch equations. Repeated Bloch simulations can be avoided by matching the measured signal with a precomputed signal dictionary on a discrete parameter grid (i.e. lookup table...
journal article 2020
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Arkesteijn, G.A.M. (author), Poot, D.H.J. (author), Ikram, M.A. (author), Niessen, W.J. (author), van Vliet, L.J. (author), Vernooij, M.W. (author), Vos, F.M. (author)
The goal of this paper is to increase the statistical power of crossing-fiber statistics in voxelwise analyses of diffusion-weighted magnetic resonance imaging (DW-MRI) data. In the proposed framework, a fiber orientation atlas and a model complexity atlas were used to fit the ball-and-sticks model to diffusion-weighted images of subjects in...
journal article 2019
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Poot, D.H.J. (author), van der Heijden, R.A.J. (author), van Middelkoop, Marienke (author), Oei, Edwin H.G. (author), Klein, S. (author)
Purpose: To identify the optimal combination of pharmacokinetic model and arterial input function (AIF) for quantitative analysis of blood perfusion in the patellar bone using dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI). Materials and Methods: This method design study used a random subset of five control subjects from an...
journal article 2018
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huizinga, w (author), Poot, D.H.J. (author), Vernooij, Meike W. (author), Roshchupkin, G.V. (author), bron, E.E. (author), Ikram, M.A. (author), Rueckert, D. (author), Niessen, W.J. (author), Klein, S. (author)
Both normal aging and neurodegenerative disorders such as Alzheimer's disease (AD) cause morphological changes of the brain. It is generally difficult to distinguish these two causes of morphological change by visual inspection of magnetic resonance (MR) images. To facilitate making this distinction and thus aid the diagnosis of...
journal article 2018
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Guyader, Jean Marie (author), Huizinga, W. (author), Poot, D.H.J. (author), van Kranenburg, Matthijs (author), Uitterdijk, André (author), Niessen, W.J. (author), Klein, S. (author)
The most widespread technique used to register sets of medical images consists of selecting one image as fixed reference, to which all remaining images are successively registered. This pairwise scheme requires one optimization procedure per pair of images to register. Pairwise mutual information is a common dissimilarity measure applied to a...
journal article 2018
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van der Heijden, R.A.J. (author), Poot, D.H.J. (author), Ekinci, Melek (author), Kotek, Gyula (author), van Veldhoven, Peter L.J. (author), Klein, S. (author), Verhaar, Jan A.N. (author), Krestin, Gabriel P. (author), Bierma-Zeinstra, Sita M.A. (author), van Middelkoop, Marienke (author), Oei, Edwin H.G. (author)
Background: Altered perfusion might play an important role in the pathophysiology of patellofemoral pain (PFP), a common knee complaint with unclear pathophysiology. Purpose: To investigate differences in dynamic contrast-enhanced (DCE)-MRI perfusion parameters between patients with PFP and healthy control subjects. Population/Subjects...
journal article 2018
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Arkesteijn, G.A.M. (author), Poot, D.H.J. (author), Niestijl, M. (author), Vernooij, Meike W. (author), Niessen, W.J. (author), van Vliet, L.J. (author), Vos, F.M. (author)
Purpose: To increase the sensitivity in longitudinal analysis of DW-MRI data with the ball-and-sticks model.
conference paper 2017
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Giordano, M. (author), Poot, D.H.J. (author), Coenen, Adriaan (author), van Walsum, Theo (author), Tezza, Michela (author), Nieman, Koen (author), Niessen, W.J. (author)
Purpose<br/>Myocardial blood flow (MBF) obtained by dynamic CT perfusion (CTP) has been recently introduced to assess hemodynamic significance of coronary stenosis in coronary artery disease. The diagnostic performance of dynamic CTP MBF is limited due to subjective interpretation of MBF maps and MBF variations caused by physiological,...
journal article 2017
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Sun, Wei (author), Poot, D.H.J. (author), Smal, Ihor (author), Yang, Xuan (author), Niessen, W.J. (author), Klein, S. (author)
Image registration is typically formulated as an optimization process, which aims to find the optimal transformation parameters of a given transformation model by minimizing a cost function. Local minima may exist in the optimization landscape, which could hamper the optimization process. To eliminate local minima, smoothing the cost function...
journal article 2017
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Guyader, Jean Marie (author), Huizinga, W. (author), Fortunati, Valerio (author), Poot, D.H.J. (author), Kranenburg, Matthijs Van (author), Veenland, J.F. (author), Paulides, Margarethus M. (author), Niessen, W.J. (author), Klein, S. (author)
In quantitative magnetic resonance imaging (qMRI), quantitative tissue properties can be estimated by fitting a signal model to the voxel intensities of a series of images acquired with different settings. To obtain reliable quantitative measures, it is necessary that the qMRI images are spatially aligned so that a given voxel corresponds in...
conference paper 2016
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Yang, J. (author), Poot, D.H.J. (author), Caan, Matthan WA (author), Su, Tanja (author), Majoie, Charles BLM (author), van Vliet, L.J. (author), Vos, F.M. (author)
Purpose<br/>This paper presents and studies a framework for reliable modeling of diffusion MRI using a data-acquisition adaptive prior.<br/><br/>Methods<br/>Automated relevance determination estimates the mean of the posterior distribution of a rank-2 dual tensor model exploiting Jeffreys prior (JARD). This data-acquisition prior is based on the...
journal article 2016
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Huizinga, W. (author), Poot, D.H.J. (author), Roshchupkin, G. (author), Bron, E. E. (author), Ikram, M. A. (author), Vernooij, M. W. (author), Rueckert, D. (author), Niessen, W.J. (author), Klein, S. (author)
Both normal aging and neurodegenerative diseases such as Alzheimer's disease cause morphological changes of the brain. To better distinguish between normal and abnormal cases, it is necessary to model changes in brain morphology owing to normal aging. To this end, we developed a method for analyzing and visualizing these changes for the...
conference paper 2016
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Caan, M.W.A. (author), Ganesh Khedoe, H. (author), Poot, D.H.J. (author), Den Dekker, A.J. (author), Olabarriaga, S.D. (author), Grimbergen, K.A. (author), Van Vliet, L.J. (author), Vos, F.M. (author)
There is an ongoing debate on how to model diffusivity in fiber crossings. We propose an optimization framework for the selection of a dual tensor model and the set of diffusion weighting parameters b, such that both the diffusion shape and orientation parameters can be precisely as well as accurately estimated. For that, we have adopted the...
journal article 2010
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Den Dekker, A.J. (author), Poot, D.H.J. (author), Bos, R. (author), Sijbers, J. (author)
Functional magnetic resonance imaging (fMRI) data that are corrupted by temporally colored noise are generally preprocessed (i.e., prewhitened or precolored) prior to functional activation detection. In this paper, we propose likelihood-based hypothesis tests that account for colored noise directly within the framework of functional activation...
journal article 2009
Searched for: author%3A%22Poot%2C+D.H.J.%22
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