Searched for: subject%3A%22De%255C+novo%255C+assembly%22
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Cosma, Bianca-Maria (author), Shirali Hossein Zade, R. (author), Jordan, E.N. (author), van Lent, P.H. (author), Peng, C. (author), Pillay, S. (author), Abeel, T.E.P.M.F. (author)
Background: Assembly algorithm choice should be a deliberate, well-justified decision when researchers create genome assemblies for eukaryotic organisms from third-generation sequencing technologies. While third-generation sequencing by Oxford Nanopore Technologies (ONT) and Pacific Biosciences (PacBio) has overcome the disadvantages of short...
journal article 2023
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Ahmed, N. (author), Qiu, T.D. (author), Bertels, K.L.M. (author), Al-Ars, Z. (author)
BACKGROUND: In Overlap-Layout-Consensus (OLC) based de novo assembly, all reads must be compared with every other read to find overlaps. This makes the process rather slow and limits the practicality of using de novo assembly methods at a large scale in the field. Darwin is a fast and accurate read overlapper that can be used for de novo...
journal article 2020