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Su, Kexin (author)General-purpose GPUs, renowned for their exceptional parallel processing capabilities and throughput, hold great promise for enhancing the efficiency of data analytics tasks. At the same time, recent developments in query execution engines have integrated the support of OLAP operations in a way that benefits from the zero serialization overhead...master thesis 2023
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Karatza, Dimitra (author)The current trend towards the integration of artificial intelligence (AI) and graphics processing unit (GPU) technologies has resulted in the development of embedded hybrid GPU-AI accelerators, which offer high computational power and energy efficiency. One of the key challenges in designing such accelerators is ensuring their timing correctness...master thesis 2023
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Goudriaan, Sven (author)Proton irradiation therapy is a powerful form of cancer treatment, promising better dose conformity as compared to conventional radiotherapy. Due to the complex scattering properties of protons, the optimization process that is needed to accurately target the cancer cells whilst causing minimal damage to<br/>the surrounding healthy tissue and...bachelor thesis 2023
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Bouter, P.A. (author)In recent years, the use of Artificial Intelligence (AI) has become prevalent in a large number of societally relevant, real-world problems, e.g., in the domains of engineering and health care. The field of Evolutionary Computation (EC) can be considered to be a sub-field of AI, concerning optimization using Evolutionary Algorithms (EAs), which...doctoral thesis 2023
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Buwalda, F.J.L. (author), de Goede, Erik (author), Knepflé, Maxim (author), Vuik, Cornelis (author)The accuracy, stability and computational efficiency of numerical methods on central processing units (CPUs) for the depth-averaged shallow water equations were well covered in the literature. A large number of these methods were already developed and compared. However, on graphics processing units (GPUs), such comparisons are relatively scarce....journal article 2023
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Koshakji, Anwar (author), Chomette, Grégoire (author), Turner, Jeffrey (author), Jablonski, Jonathan (author), Haynes, Aisha (author), Carlucci, Donald (author), Giovanardi, Bianca (author), Radovitzky, Raúl A. (author)The dynamic response of flexible filaments immersed in viscous fluids is important in cell mechanics, as well as other biological and industrial processes. In this paper, we propose a parallel computational framework to simulate the fluid-structure interactions in large assemblies of highly-flexible filaments immersed in a viscous fluid. We...journal article 2023
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Bernardini, Matteo (author), Modesti, D. (author), Salvadore, Francesco (author), Sathyanarayana, Srikanth (author), Della Posta, Giacomo (author), Pirozzoli, Sergio (author)We present STREAmS-2.0, an updated version of the flow solver STREAmS, first introduced in Bernardini et al. (2021) [1]. STREAmS-2.0 has an object-oriented design which separates the physics equations from the specific back-end, making the code more suitable for future expansions, such as porting to novel computing architectures or...journal article 2023
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Sun, W. (author), Katsifodimos, A (author), Hai, R. (author)Recent advances in Graphic Processing Units (GPUs) have facilitated a significant performance boost for database operators, in particular, joins. It has been intensively studied how conventional join implementations, such as hash joins, benefit from the massive parallelism of GPUs. With the proliferation of machine learning, more databases...conference paper 2023
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Wang, Y. (author), Voskov, D.V. (author), Daniilidis, Alexandros (author), Khait, M. (author), Saeid, S. (author), Bruhn, D.F. (author)The efficient operation and management of a geothermal project can be largely affected by geological, physical, operational and economic uncertainties. Systematic uncertainty quantification (UQ) involving these parameters helps to determine the probability of the focused outputs, e.g., energy production, Net Present Value (NPV), etc. However,...journal article 2023
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de Laat, Willem (author)The need to receive and process higher data rates in computer clusters is an ever-increasing trend. This also applies to radio-astronomic systems, which have become more distributed over the past decades, increasing data traffic between antennas and processing facilities. At the antenna, Field Programmable Gate Arrays (FPGAs) digitise the radio...master thesis 2022
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Florescu, Stefanos (author)Over the past 20 years, the cost of sequencing genomes has reduced drastically. As DNA data grows at an unprecedented rate, the need for fast and affordable software and hardware solutions for DNA analysis is higher than ever. A critical and time-consuming component in any DNA analysis pipeline is sequence alignment, which refers to mapping...master thesis 2022
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Provó Kluit, Mark (author)Largescale machine learning frameworks can accelerate training of a neural network by per forming distributed training on a cluster using multiple GPUs per node and multiple nodes. Because distributed training on a cluster involves many nodes which need to communicate and load and exchange data, a machine learning framework may at certain...master thesis 2022
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Verschoor, Fleur (author)Satellite data, such as optical and Synthetic Aperture Radar imagery, can provide information about the location and level of destruction caused by natural hazards. This information is essential to optimise the rescue mission logistics by humanitarian aid organisations and save people in need. Currently, many Automatic Damage Assessment (ADA)...master thesis 2022
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Hoofwijk, Jorn (author)In finite element software one has to solve a system of non-linear equations, which is commonly simplified to a sequence of linear system. We research the possibility to solve these systems on a GPU to improve the solve time. We are particularly interested in systems arising from geotechnical models. We compare several combinations of Krylov...master thesis 2022
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Lippmann, Philip (author)The continued development of improved algorithms and architecture for numerical simulations is at the core of increased computational performance and, therefore, the ability to perform more complex and precise numerical simulations in less time in areas such as Computational Fluid Dynamics. Employing faster algorithms on more efficient...master thesis 2022
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Park, Seongyeon (author), Kim, Hajin (author), Ahmad, T. (author), Ahmed, N. (author), Al-Ars, Z. (author), Hofstee, H.P. (author), Kim, Youngsok (author), Lee, Jinho (author)Sequence alignment forms an important backbone in many sequencing applications. A commonly used strategy for sequence alignment is an approximate string matching with a two-dimensional dynamic programming approach. Although some prior work has been conducted on GPU acceleration of a sequence alignment, we identify several shortcomings that limit...conference paper 2022
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Hogervorst, T.A. (author), Nane, R. (author), Marchiori, Giacomo (author), Qiu, Tong Dong (author), Blatt, Markus (author), Rustad, Alf Birger (author)Scientific computing is at the core of many High-Performance Computing applications, including computational flow dynamics. Because of the utmost importance to simulate increasingly larger computational models, hardware acceleration is receiving increased attention due to its potential to maximize the performance of scientific computing....journal article 2022
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Raateland, Wouter (author)Grid-based fluid simulations are often limited in resolution by their high memory usage and computational costs. One approach to reducing memory usage and computational costs is to vary the grid resolution over the spatial domain. We introduce DCGrid, a new data structure for fluid simulations. DCGrid is suited for instantiation in GPU memory...master thesis 2021
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Nayak, Arvind (author)Computing portfolio credit losses and associated risk sensitivities is crucial for the financial industry to help guard against unexpected events. Quantitative models play an instrumental role to this end. As a direct consequence of their probabilistic nature, portfolio losses are usually simulated using Monte Carlo copula models, which in turn...master thesis 2021
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Meyer, Johann (author)Aircraft are complex systems with, in some cases, high-dimensional nonlinear interactions between control surfaces. When a failure occurs, adaptive flight control methods can be utilised to stabilise and make the aircraft controllable. Adaptive flight control methods, however, require accurate aerodynamic models - where first-order continuity is...master thesis 2021