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Ashraf, I. (author), Khammassi, N. (author), Taouil, M. (author), Bertels, K.L.M. (author)The growing demand of processing power is being satisfied mainly by an increase in the number of homogeneous and heterogeneous computing cores in a system. Efficient utilization of these architectures demands analysis of memory-access behaviour of applications and perform data-communication aware mapping of applications on these architectures....journal article 2018
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Houtgast, E.J. (author), Sima, V.M. (author), Bertels, K.L.M. (author), Al-Ars, Z. (author)We present the first accelerated implementation of BWA-MEM, a popular genome sequence alignment algorithm widely used in next generation sequencing genomics pipelines. The Smith-Waterman-like sequence alignment kernel requires a significant portion of overall execution time. We propose and evaluate a number of FPGA-based systolic array...conference paper 2015