Agent-based mathematical modeling of pancreatic cancer growth and several therapies

Cancer is known as one of the leading causes of death in the world with difficult<br/>diagnose at early stages, poor prognosis and high mortality. Animal-based<br/>experiments and clinical trials have always been the main approach for cancer<br/>research, albeit they may have limitations and ethical issues. Mathematicalmodeling<br/>as an...

A phenomenological model for cell and nucleus deformation during cancer metastasis

Cell migration plays an essential role in cancer metastasis. In cancer invasion through confined spaces, cells must undergo extensive deformation, which is a capability related to their metastatic potentials. Here, we simulate the deformation of the cell and nucleus during invasion through a dense, physiological microenvironment by developing...

A model for cell migration in non-isotropic fibrin networks with an application to pancreatic tumor islets

Cell migration, known as an orchestrated movement of cells, is crucially important for wound healing, tumor growth, immune response as well as other biomedical processes. This paper presents a cell-based model to describe cell migration in non-isotropic fibrin networks around pancreatic tumor islets. This migration is determined by the...

Mathematical modelling of angiogenesis using continuous cell-based models

In this work, we develop a mathematical formalism based on a 3D in vitro model that is used to simulate the early stages of angiogenesis. The model treats cells as individual entities that are migrating as a result of chemotaxis and durotaxis. The phenotypes used here are endothelial cells that can be distinguished into stalk and tip (leading)...

Een verbeterd semi-stochastisch model voor wondheling onder infectie

Voor dit project is een bestaand semi-stochastisch cell-based model voor wondheling onder infectie bekeken, dat migratie, deling, sterfte, melkzuurproducerende bacteriën en witte bloedcellen omvat. Dit model wordt uitgebreid, onder andere met een dynamische implementatie van celdeling. Daarnaast wordt met behulp van numerieke methoden de...

Particle methods to solve modelling problems in wound healing and tumor growth

The paper deals with a compilation of several of our modelling studies on particle methods used for simulation of wound healing and tumor growth processes. The paper serves as an introduction of our modelling approaches to researchers with interest in biological cell-based models that use particle-based modelling approaches. The particles that...

Simulating sprouting angiogenesis: Using a new 3D substrate dependent cell-based model

Angiogenesis1 is the biological mechanism by which new blood vessels sprout from existing ones. It differs from vasculogenesis, which is the de novo growth of the primary vascular network from initially dispersed endothelial cells (ECs). Vasculogenesis is predominant in embryonic tissue whilst new vasculature in the adult body arises mostly from...

Towards a Mathematical Formalism for Semi-stochastic Cell-Level Computational Modeling of Tumor Initiation

A phenomenological model is formulated to model the early stages of tumor formation. The model is based on a cell-based formalism, where each cell is represented as a circle or sphere in two-and three dimensional simulations, respectively. The model takes into account constituent cells, such as epithelial cells, tumor cells, and T-cells that...

A semi-stochastic cell-based formalism to model the dynamics of migration of cells in colonies

We consider the movement and viability of individual cells in cell colonies. Cell movement is assumed to take place as a result of sensing the strain energy density as a mechanical stimulus. The model is based on tracking the displacement and viability of each individual cell in a cell colony. Several applications are shown, such as the dynamics...