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Karskens, Samuel (author)Abundance estimation with the use of environmental samples has been used during the SARS-CoV-2 pandemic to identify the abundances of different lineages. AmpliDiff, an algorithm that tries to find parts of DNA that can differentiate between different input genomes was used on a SARS-CoV-2 dataset to find these amplicons. The AmpliDiff algorithm...bachelor thesis 2024
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Taklimi, Sam (author)The objective of this project is to train a model that transforms a tree with its foliage into only its branch structure. This is achieved by employing machine-learning techniques, specifically Generative Adverserial Networks (GANs). By utilizing the proposed method, a predictive model is built that automatically minimizes its own error function...bachelor thesis 2024
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van der Schoot, Mathijs (author)The Maven ecosystem, with an emphasis on Maven Central, contains a plethora of toy-projects. This paper addresses this problem by formulating a core containing the pillars of the Maven ecosystem, such that it can be exploited for research concerning li- brary quality. The construction of said core is done by analyzing the availability, relevance...bachelor thesis 2024
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Marczuk, Wojciech (author)Scratch is a block-based programming language. It is designed to be simple and syntax error avoidant. This makes Scratch an accessible platform for cultivating coding skills. Many young learners are taught about different programming skills using various project types as examples. For instance, games are used as an engagement tool, and various...bachelor thesis 2024
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Lacombe, Pablo (author)This paper presents a comprehensive exploration of a novel method combining Principal Component Analysis (PCA) and Neural Networks (NN) to efficiently solve Partial Differential Equations (PDEs), a fundamental challenge in modeling a wide range of real-world phenomena. Our research extends the work of Bhattacharya et al. by focusing on PCA for...bachelor thesis 2024
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Mozafari, Erfan (author)The most established and widely used methods for analysing tree images for tasks such as geometry analysis, segmentation and classification often rely on pixels. In this paper, the applicability of analyzing tree geometry based on a graph representation rather than a pixel-based approach is pursued. To do so, 2D renders of different species of...bachelor thesis 2024
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Gafton, Dinu (author)Learning curves are useful to determine the amount of data needed for a certain performance. The conventional belief is that increasing the amount of data improves performance. However, recent work challenges this assumption, and shows nonmonotonic behaviors of certain learners on certain problems. This paper presents a new approach for...bachelor thesis 2024
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van der Poel, Jenneke (author)Staphylococcus aureus and Pseudomonas aeruginosa are two species of bacteria that are involved in numerous conditions, including lung infections and chronic wound infections. The aim of this project was to study the short-term interactions that occur when P. aeruginosa first encounters an established S. aureus colony, which it then seeks to...bachelor thesis 2024
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Nenovski, Lazar (author)Abstract— Federated Learning (FL) makes it possible for a network of clients to jointly train a machine learning model, while also keeping the training data private. There are several approaches when designing a FL network and while most existing research is focused on a single-server design, new and promising variations are arising that make...bachelor thesis 2024
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van der Meulen, Jan (author)Federated learning (FL) is a privacy preserving machine learning approach which allows a machine learning model to be trained in a distributed fashion without ever sharing user data. Due to the large amount of valuable text and voice data stored on end-user devices, this approach works particularly well for natural language processing (NLP)...bachelor thesis 2024
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Verlooy, Bas (author)The Alexandria3K library, a versatile Python-based tool, has been expanded to include the integra- tion of the PubMed dataset, enriching its capabil- ities in the analysis of scientific papers. Origi- nally supporting major datasets like Crossref and US patents, and smaller yet significant datasets like ORCID. The addition of PubMed enables in...bachelor thesis 2024
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de Bruin, Rowan (author)This study explores the feasibility of categorizing GitHub projects based on their interactions and activities, aiming to assist both researchers and practitioners in navigating the vast landscape of open-source software. Through experiments and analysis, key attributes contributing to project categorization are identified, paving the way for...bachelor thesis 2024
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Gupta, Dibyendu (author)The growth of academic publications, heterogeneity of datasets and the absence of a globally accepted organization identifier introduce the challenge of affiliation disambiguation in bibliographic databases. In this paper, we create a baseline using the currently implemented algorithm for author affiliation linkage in Alexandria3k by comparing...bachelor thesis 2024
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Meeusen, Brent (author)Scratch is a popular, visual programming language aimed at children, and is used by teachers and after school code clubs to teach their students about programming. Measuring whether they understand the underlying concepts, however, is a difficult task. In this research, we tried clustering Scratch projects by complexity to help students improve...bachelor thesis 2024
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Turcu, Alexandru (author)This paper aims to study the importance of considering the documentation side of GitHub repositories when assessing the similarity between two or more applications. Readme and Wiki files, along with Comments from the source files, are the dimensions proposed to be analyzed through our methodology and experiments. We propose a pipeline that first...bachelor thesis 2024
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Manda, Sebastian (author)Trees are essential components of both real and digital environments. Therefore, it is important to have 3D models of trees that are of high quality and computationally efficient. One way to achieve this is by compressing a high-quality model using billboard rendering, which involves partitioning the tree into multiple planes to produce a...bachelor thesis 2024
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Lim, Dayoung (author)Accurate topic classification is crucial in the scientific community when it comes to finding relevant journals. However, the efficiency and accuracy of topic classification of publications do not seem to be at its best performance, especially with the fast-paced rise in the quantity of research papers. Our research aims to address this problem...bachelor thesis 2024
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Jarosz, Marcin (author)This research investigates the application of Generative Adversarial Networks (GANs) and probabilistic Principal Component Analysis (PPCA) in generating synthetic data for pathway optimization in metabolic engineering. The study aims to compare the performance of these generative models, addressing key questions regarding their utilization, the...bachelor thesis 2024
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Ramsundersingh, Pravesha (author)A learning curve can serve as an indicator of the “performance of trained models versus the training set size” [1]. Recent research on learning curve analysis has been carried out within the Learning Curve Database (LCDB) [2] This paper will investigate if there are similarities amongst these curves by clustering those provided by the LCDB. The...bachelor thesis 2024
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Zlei, Andreea (author)This study delves into machine learning (ML) education by conducting a comprehensive literature review, a targeted survey of ML lecturers in Dutch universities, and a comparative experiment. These methods aid in addressing the challenges of aligning teaching methods with the evolving nature of ML and the growing demands of the field, and fill in...bachelor thesis 2024
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