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Showing 1 to 15 of 15 found. | Sort by date

1 Interactomics in the human intestine: Lactobacilli and Bifidobacteria make a difference.
article 2008    
Author: Boesten, R.J. · Vos, W.M.de
Keywords: Health · Gene expression profiling · Genetics · Human · Metabolism · Microbiology · Animals · Bacterial Proteins · Bifidobacterium · Colon · Gene Expression Profiling · Humans · Ileum · Lactobacillus · Mice · Proteins
[Abstract]

2 A Bifidobacterium mixed-species microarray for high resolution discrimination between intestinal bifidobacteria
article 2009    
Author: Boesten, R.J. · Schuren, F.H.J. · Vos, W.M.de
Keywords: Biology · Biotechnology · Bifidobacterium · DNA-DNA hybridization · Genomic comparison · Microarray · bacterial DNA · RNA 16S · article · bacterial genome · bacterium identification · Bifidobacterium · Bifidobacterium adolescentis · Bifidobacterium animalis · Bifidobacterium bifidum · Bifidobacterium catenulatum · Bifidobacterium longum · Bifidobacterium pseudolongum · DNA DNA hybridization · DNA microarray · intestine flora · nonhuman · nucleotide sequence · priority journal · species identification · unindexed sequence · Animals · Bacterial Typing Techniques · Bifidobacterium · Cluster Analysis · Comparative Genomic Hybridization · DNA, Bacterial · Genome, Bacterial · Genomic Library · Intestines · Oligonucleotide Array Sequence Analysis · Phylogeny · RNA, Ribosomal, 16S · Species Specificity · Bifidobacterium · Bifidobacterium adolescentis · Bifidobacterium animalis · Bifidobacterium animalis subsp. animalis · Bifidobacterium animalis subsp. lactis · Bifidobacterium bifidum · Bifidobacterium catenulatum · Bifidobacterium longum · Bifidobacterium pseudolongum · Mammalia
[Abstract]

3 Analysis of infant isolates of Bifidobacterium breve by comparative genome hybridization indicates the existence of new subspecies with marked infant specificity
article 2011    
Author: Boesten, R. · Schuren, F. · Wind, R.D. · Knol, J. · Vos, W.M. de
Keywords: Nutrition · Bifidobacterium breve · Comparative genome hybridization · Infant isolates · Microarray · Life · MSB - Microbiology and Systems Biology · EELS - Earth, Environmental and Life Sciences
[Abstract]

4 Bifidobacterium breve-HT-29 cell line interaction: Modulation of TNF-a induced gene expression
article 2011    
Author: Boesten, R.J. · Schuren, F.H.J. · Willemsen, L.E.M. · Vriesema, A. · Knol, J. · Vos, W.M. de
Keywords: Nutrition · Bifidobacteria · Interleukin 8 · Microarray · Microbe-host interaction · Transcriptomics · Life · MSB - Microbiology and Systems Biology · EELS - Earth, Environmental and Life Sciences
[Abstract]

5 Evaluating the microbial diversity of an in vitro model of the human large intestine by phylogenetic microarray analysis
article 2010    
Author: Rajilić-Stojanović, M. · Maathuis, A. · Heilig, H.G.H.J. · Venema, K. · Vos, W.M.de · Smidt, H.
Keywords: Nutrition · Biomedical Research
[Abstract]

6 Mixed-species genomic microarray analysis of fecal samples reveals differential transcriptional responses of bifidobacteria in breast- And formula-fed infants
article 2009    
Author: Klaassens, E.S. · Boesten, R.J. · Haarman, M. · Knol, J. · Schuren, F.H. · Vaughan, E.E. · Vos, W.M.de
Keywords: Biology · Biotechnology · Bifidobacteria · Bifidobacterium · Breast milk · Carbohydrate metabolism · Denaturing gradient gel electrophoresis · Exopolysaccharide · Fecal samples · Fructo-oligosaccharides · Human guts · In-vivo · Metabolic activity · Microarray analysis · Mixed species · Nucleotide sequences · Protein-encoding genes · Quantitative PCR · Quantitative real time PCR · Related functions · RRna genes · Sequence analysis · Species diversity · Transcriptional response · Carbohydrates · Electrophoresis · Encoding (symbols) · Functional groups · Gelation · Metabolism · Nucleic acids · Polysaccharides · RNA · Genes · bacterial RNA · exopolysaccharide · folic acid · fructose oligosaccharide · galactose oligosaccharide · ribosome RNA · abundance · bacterium · feces · gene expression · genomics · hominid · metabolism · polymerase chain reaction · real time · RNA · sugar · article · artificial milk · bacterial metabolism · Bifidobacteriaceae · breast milk · carbohydrate metabolism · denaturing gradient gel electrophoresis · feces analysis · gene expression regulation · gene sequence · human · human experiment · in vivo study · infant · intestine · microarray analysis · microbial community · microbial diversity · normal human · nucleotide sequence · polymerase chain reaction · quantitative analysis · real time polymerase chain reaction · RNA hybridization · RNA isolation · species diversity · transcription regulation · bacterial count · Bifidobacterium · biodiversity · classification · diet · DNA fingerprinting · DNA microarray · feces · gene expression profiling · genetics · microbiology · Bifidobacterium · Bifidobacterium · Biodiversity · Colony Count, Microbial · Diet · DNA Fingerprinting · Feces · Gene Expression Profiling · Humans · Infant · Infant Formula · Milk, Human · Oligonucleotide Array Sequence Analysis
[PDF] [Abstract]

7 Differential modulation by Akkermansia muciniphila and faecalibacterium prausnitzii of host peripheral lipid metabolism and histone acetylation in mouse gut organoids
article 2014    
Author: Lukovac, S. · Belzer, C. · Pellis, L. · Keijser, B.J. · Vos, W.M. de · Montijn, R.C. · Roeselers, G.
Keywords: Biology · G protein coupled receptor 43 · Histone deacetylase · Membrane protein · Peroxisome proliferator activated receptor gamma · Protein Fiaf · Short chain fatty acid · Unclassified drug · Adult · Animal experiment · Animal tissue · Bacterial strain · Cell cycle regulation · Cell metabolism · Controlled study · Down regulation · Epigenetics · Ex vivo study · Fiaf gene · Gene · Gene control · Gene expression · Gene silencing · Gpr43 gene · Hdac3 gene · Hdac5 gene · Histone acetylation · Host pathogen interaction · Ileum · In vivo study · Intestine flora · Lipid metabolism · Lipolysis · Male · Mouse · Nonhuman · Nucleotide sequence · Ppargamma gene · Satiety · Transcription regulation · Akkermansia muciniphila · Faecalibacterium prausnitzii · Biomedical Innovation · Healthy Living · Life · MSB - Microbiology and Systems Biology · ELSS - Earth, Life and Social Sciences
[Abstract]

8 Functional analysis of three plasmids from Lactobacillus plantarum
article 2005    
Author: Kranenburg, R. van · Golic, N. · Bongers, R. · Leer, R.J. · Vos, W.M. de · Siezen, R.J. · Kleerebezem, M.
Keywords: Biology · Biotechnology · Biomarkers · Genes · Plants (botany) · Functional analysis · Bacteria · Carnobacterium maltaromaticum · Arsenates · Arsenites · Base Sequence · Chromosome Mapping · DNA Replication · DNA, Bacterial · Drug Resistance, Bacterial · Gene Dosage · Genes, Bacterial · Lactobacillus plantarum · Molecular Sequence Data · Plasmids · Replicon · Sequence Homology, Nucleic Acid · Transfection · Bacillus subtilis · Carnobacterium maltaromaticum · Lactobacillus plantarum · Lactococcus lactis · Lactococcus plantarum
[PDF] [Abstract]

9 Profiling human gut bacterial metabolism and its kinetics using [U- 13C]glucose and NMR
article 2010    
Author: Graaf, A.A. de · Maathuis, A. · Waard, P. de · Deutz, N.E.P. · Dijkema, C. · Vos, W.M. de · Venema, K.
Keywords: Biology · Physiological Sciences · Bacterial metabolism · Metabolic flux analysis · Metabolomics · NMR · Stable isotopes
[Abstract]

10 Linking phylogenetic identities of bacteria to starch fermentation in an in vitro model of the large intestine by RNA-based stable isotope probing
article 2009    
Author: Kovatcheva-Datchary, P. · Egert, M. · Maathuis, A. · Rajilić-Stojanović, M. · Graaf, A.A.de · Smidt, H. · Vos, W.M.de · Venema, K.
Keywords: Biology · biomedical research · acetic acid derivative · bacterial DNA · bacterial RNA · butyric acid derivative · isotope · propionic acid derivative · ribosome DNA · RNA 16S · starch · article · bacterium · chemistry · classification · DNA fingerprinting · DNA sequence · fermentation · genetics · growth, development and aging · human · in vitro study · large intestine · metabolism · microbiology · molecular genetics · nucleotide sequence · phylogeny · restriction fragment length polymorphism · RNA gene · sequence homology · staining · Acetates · Bacteria · Butyrates · DNA Fingerprinting · DNA, Bacterial · DNA, Ribosomal · fermentation · genes, rRNA · humans · large intestine · isotopes · molecular sequence data · phylogeny · polymorphism · restriction fragment length · propionates · bacterial RNA · ribosomal RNA 16S · sequence analysis DNA · sequence homology · nucleic acid · staining and labeling · starch · bacteria (microorganisms) · bifidobacterium adolescentis · eubacterium rectale · prevotella · ruminococcus · ruminococcus bromii
[Abstract]

11 Identification of glucose-fermenting bacteria present in an in vitro model of the human intestine by RNA-stable isotope probing
article 2007    
Author: Egert, M. · Graaf, A.A. de · Maathuis, A. · Waard, P. de · Plugge, C.M. · Smidt, H. · Deutz, N.E.P. · Dijkema, C. · Vos, W.M. de · Venema, K.
Keywords: Biology · Biomedical Research · Carbohydrates · Digestion · Metabolic profiling · NMR · Stable isotope probing · acetic acid · alcohol · bacterial RNA · butyric acid · carbohydrate · carbon 13 · formic acid · glucose · glycerol · lactic acid · RNA 16S · stable isotope · bacterium · carbohydrate · digestion · fermentation · glucose · inoculation · microbial activity · phylogenetics · RNA · stable isotope · article · bacterium identification · Clostridium perfringens · controlled study · density gradient centrifugation · fermentation · gastrointestinal tract · in vitro study · inoculation · intestine · lactic acid bacterium · Lactobacillus fermentum · microflora · molecular phylogeny · molecular probe · nonhuman · nuclear magnetic resonance spectroscopy · nucleotide sequence · priority journal · RNA fingerprinting · RNA stability · strain difference · Streptococcus bovis · Bacteria, Anaerobic · Carbon Isotopes · Fermentation · Glucose · Gram-Positive Bacteria · Humans · Intestine, Small · Isotope Labeling · Magnetic Resonance Spectroscopy · Models, Biological · Molecular Sequence Data · Peristalsis · RNA, Bacterial · RNA, Ribosomal, 16S · Sequence Analysis, DNA · Bacteria (microorganisms) · Clostridium perfringens · Lactobacillus fermentum · Streptococcus bovis
[Abstract]

12 Expression of Aspergillus hemoglobin domain activities in Aspergillus oryzae grown on solid substrates improves growth rate and enzyme production
article 2006    
Author: Biesebeke, R. te · Boussier, A. · Biezen, N. van · Braaksma, M. · Hondel, C.A.M.J.J. · Vos, W.M. de · Punt, P.J.
Keywords: Biology · Biotechnology

13 Different control mechanisms regulate glucoamylase and protease gene transcription in Aspergillus oryzae in solid-state and submerged fermentation
article 2005    
Author: Biesebeke, R. te · Biezen, N. van · Vos, W.M. de · Hondel, C.A.M.J.J. van den · Punt, P.J.
Keywords: Biology · Biotechnology · Carbon · Control theory · Crops · Enzymes · Fermentation · Genes · Nitrogen · Gene expressions · Gene transcription · Glucomylase (glaB) · Solid-state fermentation (SSF) · Enzyme kinetics · carbon · glucan 1,4 alpha glucosidase · nitrogen · proteinase · fermentation · gene expression · protein · article · Aspergillus oryzae · controlled study · culture medium · fungus hyphae · gene control · gene expression · liquid culture · molecular mechanics · nonhuman · pH measurement · seed kernel · solid state fermentation · transcription regulation · wheat · Aspergillus oryzae · Biomass · Carbon · Fermentation · Gene Expression Profiling · Gene Expression Regulation, Fungal · Glucan 1,4-alpha-Glucosidase · Glucose · Hydrogen-Ion Concentration · Nitrogen · Peptide Hydrolases · RNA, Fungal · RNA, Messenger · Transcription, Genetic · Triticum · Carbon · Enzymatic Activity · Enzymes · Fermentation · Genes · Nitrogen · Wheat · Aspergillus oryzae · Triticum aestivum
[Abstract]

14 Pili-like proteins of Akkermansia muciniphila modulate host immune responses and gut barrier function
article 2017    
Author: Ottman, N. · Reunanen, J. · Meijerink, M. · Pietila, T.E. · Kainulainen, V. · Klievink, J. · Huuskonen, L. · Aalvink, S. · Skurnik, M. · Boeren, S. · Satokari, R. · Mercenier, A. · Palva, A. · Smidt, H. · Vos, W.M. De · Belzer, C.
Keywords: Biology · Biomedical Innovation · Healthy Living · Life · RAPID - Risk Analysis for Products in Development · ELSS - Earth, Life and Social Sciences
[PDF] [Abstract]

15 Aspergillus oryzae in solid-state and submerged fermentations: Progress report on a multi-disciplinary project
article 2002    
Author: Biesebeke, R. te · Ruijter, G. · Rahardjo, Y.S.P. · Hoogschagen, M.J. · Heerikhuisen, M. · Levin, A. · Driel, K.G.A. van · Schutyser, M.A.I. · Dijksterhuis, J. · Zhu, Y. · Weber, F.J. · Vos, W.M. de · Hondel, K.A.M.J.J. van den · Rinzema, A. · Punt, P.J.
Keywords: Biology · Biotechnology · Amylase · Aspergillus oryzae · Genome-wide expression analysis · Morphology · Polyol · Protease · Solid state · Submerged fermentation · Aspergillus oryzae · conference paper · correlation analysis · fungus growth · fungus hyphae · gene expression · hydrolysis · mycelial growth · nonhuman · oxygen consumption · protein expression · solid state fermentation · temperature dependence · article · biotechnology · fermentation · fungal gene · gene expression regulation · genetics · metabolism · methodology · physiology · Aspergillus · Aspergillus oryzae · Fungi · oxygen · Aspergillus oryzae · Biotechnology · Fermentation · Gene Expression Regulation, Fungal · Genes, Fungal · Hyphae · Oxygen · Oxygen Consumption
[Abstract]

Search results also available in MS Excel format.

Showing 1 to 15 of 15 found. | Sort by date