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1 Analysis of temporal gene expression during Bacillus subtilis spore germination and outgrowth
article 2007    
Author: Keijser, B.J.F. · Beek, A. ter · Rauwerda, H. · Schuren, F. · Montijn, R. · Spek, H. van der · Brul, S.
Keywords: Biology · Biotechnology · Cell division · Cell growth · DNA repair · DNA replication · Microscopy · Spore germination · Sporogenesis · Transcription regulation · Bacillus subtilis · Gene Expression · Gene Expression Profiling · Oligonucleotide Array Sequence Analysis · RNA, Bacterial · RNA, Messenger · Spores, Bacterial · Time Factors · Transcription, Genetic · Bacillus subtilis
[Abstract]

2 Pathway and single gene analyses of inhibited Caco-2 differentiation by ascorbate-stabilized quercetin suggest enhancement of cellular processes associated with development of colon cancer
article 2007    
Author: Dihal, A.A. · Tilburgs, C. · Erk, M.J. van · Rietjens, I.M.C.M. · Woutersen, R.A. · Stierum, R.H.
Keywords: Toxicology and Applied Pharmacology · Caco-2 · Colorectal cancer · Differentiation · Microarray · Quercetin · ascorbic acid · quercetin · article · cell differentiation · cell division · cell strain CACO 2 · colon tumor · comparative study · DNA microarray · drug effect · drug stability · gene expression · genetics · human · pathology · Ascorbic Acid · Caco-2 Cells · Cell Differentiation · Cell Division · Colonic Neoplasms · Drug Stability · Gene Expression · Humans · Oligonucleotide Array Sequence Analysis · Quercetin
[Abstract]

3 Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA
article 2007    
Author: Nueda, M.J. · Conesa, A. · Westerhuis, J.A. · Hoefsloot, H.C.J. · Smilde, A.K. · Talón, M. · Ferrer, A.
Keywords: Biology · Analytical research · analysis of variance · article · bioinformatics · correlation analysis · data base · gene expression profiling · genetic selection · genetic transcription · mathematical analysis · microarray analysis · nonhuman · priority journal · simultaneous component analysis · statistical analysis · time series analysis · Algorithms · Analysis of Variance · Computational Biology · Computer Simulation · Data Interpretation, Statistical · Gene Expression Profiling · Models, Genetic · Models, Statistical · Oligonucleotide Array Sequence Analysis · Principal Component Analysis · Time Factors · Transcription, Genetic
[Abstract]

4 Time-resolved and tissue-specific systems analysis of the pathogenesis of insulin resistance.
article 2010    
Author: Kleemann, R. · Erk, M. van · Verschuren, L. · Hoek, A.M. van den · Koek, M. · Wielinga, P.Y. · Jie, A. · Pellis, L. · Bobeldijk-Pastorova, I. · Kelder, T. · Toet, K. · Wopereis, S. · Cnubben, N. · Evelo, C. · Ommen, B. van · Kooistra, T.
Keywords: Biology · Biomedical Research · Apolipoprotein E3 · Fatty acid · Blood · DNA microarray · Genetics · Obesity · physiology · transgenic mouse · Western blotting · Adiposity · Animals · Apolipoprotein E3 · Blotting, Western · Fatty Acids, Nonesterified · Glucose Tolerance Test · Insulin Resistance · Male · Mice · Mice, Transgenic · Oligonucleotide Array Sequence Analysis · Biomedical Innovation · Healthy Living · Life · MHR - Metabolic Health Research MSB - Microbiology and Systems Biology · EELS - Earth, Environmental and Life Sciences
[PDF] [Abstract]

5 Defining best practice for microarray analyses in nutrigenomic studies
article 2005    
Author: Garosi, P. · Filippo, C. de · Erk, M. van · Rocca-Serra, P. · Sansone, S.A. · Elliott, R.
Keywords: Nutrition · Biomedical Research · Experimental design · Microarrays · Standardisation · Statistical analysis · diet · image analysis · microarray analysis · nutrigenomics · nutrition · RNA extraction · standardization · statistical analysis · animal · DNA microarray · image processing · methodology · Animals · Data Interpretation, Statistical · Gene Expression Profiling · Genome · Humans · Image Processing, Computer-Assisted · Nutrition Physiology · Oligonucleotide Array Sequence Analysis
[PDF] [Abstract]

6 A framework to identify physiological responses in microarray-based gene expression studies: Selection and interpretation of biologically relevant genes
article 2008    
Author: Rodenburg, W. · Heidema, A.G. · Boer, J.M.A. · Bovee-Oudenhoven, I.M.J. · Feskens, E.J.M. · Mariman, E.C.M. · Keijer, J.
Keywords: Biological processes · Gene selection · Random forest · t-test · Transcriptomics · Adaptation, Physiological · Algorithms · Animals · Automatic Data Processing · Cecum · Cluster Analysis · Colon · Data Interpretation, Statistical · Dietary Sucrose · Gene Expression Profiling · Gene Expression Regulation · Gene Regulatory Networks · Genome · Oligonucleotide Array Sequence Analysis · Rats · Rats, Wistar · Signal Transduction · Rattus
[Abstract]

7 Chronic quercetin exposure affects fatty acid catabolism in rat lung
article 2006    
Author: Boer, V.C.J. de · Schothorst, E.M. van · Dihal, A.A. · Woude, H. van der · Arts, I.C.W. · Rietjens, I.M.C.M. · Hollman, P.C.H. · Keijer, J.
Keywords: Biomedical Research · Fatty acid metabolism · Flavonoids · Microarray · Nutrigenomics · Polyphenols · Quercetin · fatty acid · quercetin · animal experiment · article · catabolism · controlled study · diet · genomics · health · ketogenesis · lung parenchyma · male · microarray analysis · nonhuman · nucleotide sequence · oxidation · quantitative analysis · rat · real time polymerase chain reaction · unindexed sequence · upregulation · Animals · Diet · Fatty Acids · Gene Expression Regulation · Lung · Male · Oligonucleotide Array Sequence Analysis · Quercetin · Rats · Rats, Inbred F344
[Abstract]

8 Interactions between polycyclic aromatic hydrocarbons in binary mixtures: Effects on gene expression and DNA adduct formation in precision-cut rat liver slices
article 2008    
Author: Staal, Y.C.M. · Pushparajah, D.S. · Herwijnen, M.H.M. van · Gottschalk, R.W.H. · Maas, L.M. · Ioannides, C. · Schooten, F.J. van · Delft, J.H.M. van
Keywords: Nutrition · benzo[a]pyrene · benzo[b]fluoranthene · complementary DNA · dibenz[a,h]anthracene · dibenzo[a,l]pyrene · fluoranthene · polycyclic aromatic hydrocarbon · animal experiment · animal tissue · article · carcinogenic activity · DNA adduct · DNA microarray · gene expression · gene interaction · liver slice · male · molecular interaction · nonhuman · nucleotide sequence · priority journal · rat · Animals · Carcinogens · DNA Adducts · Gene Expression · Liver · Male · Oligonucleotide Array Sequence Analysis · Polycyclic Hydrocarbons, Aromatic · Rats · Rats, Wistar · Rattus
[Abstract]

9 Transcriptome analysis of sorbic acid-stressed Bacillus subtilis reveals a nutrient limitation response and indicates plasma membrane remodeling
article 2008    
Author: Beek, A. ter · Keijser, B.J.F. · Boorsma, A. · Zakrzewska, A. · Orij, R. · Smits, G.J. · Brul, S.
Keywords: Biology · Biotechnology · cerulenin · sorbic acid · tricarboxylic acid · acidity · article · Bacillus subtilis · bacterial gene · bacterial genome · bacterial growth · bkdr regulated gene · ccpa gene · cell membrane · codY gene · fag bene · fur gene · genetic transcription · growth inhibition · nonhuman · nutrient limitation · priority journal · regulon · sigh mediated gene · sigl mediated gene · sporogenesis · transcriptomics · upregulation · Anions · Bacillus subtilis · Bacterial Proteins · Cell Membrane · Cerulenin · Gene Expression Profiling · Gene Expression Regulation, Bacterial · Hydrogen-Ion Concentration · Oligonucleotide Array Sequence Analysis · Regulon · Reverse Transcriptase Polymerase Chain Reaction · Sorbic Acid · Bacillus subtilis
[Abstract]

10 TrgI, toluene repressed gene I, a novel gene involved in toluene-tolerance in Pseudomonas putida S12
article 2009    
Author: Volkers, R.J.M. · Ballerstedt, H. · Ruijssenaars, H. · Bont, J.A.M. de · Winde, J.H. de · Wery, J.
Keywords: Biology · Biotechnology · Pseudomonas putida S12 · Solvent-tolerance · Toluene · Transcriptomics · TrgI · bacterial protein · solvent · toluene · article · bacterial gene · biosynthesis · chemistry · DNA microarray · drug effect · flagellum · gene expression regulation · genetic transcription · genetics · metabolism · polymerase chain reaction · principal component analysis · Pseudomonas putida · time · Bacterial Proteins · Flagella · Gene Expression Regulation, Bacterial · Genes, Bacterial · Oligonucleotide Array Sequence Analysis · Polymerase Chain Reaction · Principal Component Analysis · Pseudomonas putida · Solvents · Time Factors · Toluene · Transcription, Genetic · Bacteria (microorganisms) · Pseudomonas · Pseudomonas putida
[Abstract]

11 Flexible biochips for detection of biomolecules
article 2009    
Author: Peter, M. · Schüler, T. · Furthner, F. · Rensing, P.A. · Heck, G.T. van · Schoo, H.F.M. · Möllier, R. · Fritzsche, W. · Breemen, A.J.J.M. van · Meinders, E.R.
Keywords: Detection of biomolecules · DNA detection · DNA molecules · Electrode gap · Electrode pattern · Gold electrodes · Higher temperatures · Lower cost · Metal patterning · Optical detection · Optical lithography · Plastic substrates · Polyethylene naphthalate · Resistance measurement · Rigid substrates · Roll to roll manufacturing · SEM · Silver enhancement · Binding energy · Binding sites · Biochips · Biosensors · DNA · Genes · Nucleic acids · Optical microscopy · Photolithography · Scanning electron microscopy · Silver · Substrates · Bioassay · article · DNA microarray · genetic procedures · methodology · scanning electron microscopy · Biosensing Techniques · Microscopy, Electron, Scanning · Oligonucleotide Array Sequence Analysis
[Abstract]

12 Dynamics in prophage content of invasive and noninvasive M1 and M28 Streptococcus pyogenes isolates in the Netherlands from 1959 to 1996
article 2007    
Author: Vlaminckx, B.J.M. · Schuren, F.H.J. · Montijn, R.C. · Caspers, M.P.M. · Beitsma, M.M. · Wannet, W.J.B. · Schouls, L.M. · Verhoef, J. · Jansen, W.T.M.
Keywords: Biology · Biotechnology · protein sdaD2 · protein sdn · speA2 antigen · speC antigen · speK antigen · streptodornase · superantigen · unclassified drug · article · bacterial genome · bacterial strain · bacterial virulence · bacterium isolate · controlled study · DNA microarray · Netherlands · nonhuman · nucleotide sequence · priority journal · prophage · Streptococcus group A · Streptococcus infection · Streptococcus pyogenes · Antigens, Bacterial · Bacterial Outer Membrane Proteins · Carrier Proteins · Deoxyribonuclease I · Humans · Netherlands · Oligonucleotide Array Sequence Analysis · Polymerase Chain Reaction · Prophages · Streptococcal Infections · Streptococcus Phages · Streptococcus pyogenes · Superantigens · Virulence · Virulence Factors
[Abstract]

13 Toxicogenomics of bromobenzene hepatotoxicity: A combined transcriptomics and proteomics approach
article 2003    
Author: Heijne, W.H.M. · Stierum, R.H. · Slijper, M. · Bladeren, P.J. van · Ommen, B. van
Keywords: Toxicology Health · Physiological Sciences · Bromobenzene · cDNA microarray · Hepatotoxicity · Proteomics · Toxicogenomics · Transcriptomics · alpha glutamylcysteine synthetase · bromobenzene · cathepsin L · enzyme · epoxide hydrolase · glutathione · glutathione transferase · heme oxygenase · messenger RNA · peroxiredoxin · proteasome · unclassified drug · animal experiment · animal model · animal tissue · article · controlled study · enzyme activity · enzyme induction · enzyme regulation · enzyme subunit · gene control · gene expression · gene identification · gene induction · genomics · glutathione metabolism · liver toxicity · lysosome · male · nonhuman · nucleotide sequence · oxidative stress · priority journal · protein content · protein degradation · protein depletion · protein expression · protein synthesis · proteomics · rat · RNA analysis · tissue level · unindexed sequence · weight reduction · Animals · Bromobenzenes · Liver · Male · Oligonucleotide Array Sequence Analysis · Pharmacogenetics · Proteomics · Rats · Rats, Wistar · Transcription, Genetic
[Abstract]

14 Molecular characterization of trimellitic anhydride-induced respiratory allergy in Brown Norway rats
article 2008    
Author: Kuper, C.F. · Heijne, W.H. · Dansen, M. · Verhoeckx, K.C. · Boorsma, A. · Radonjic, M. · Bruijntjes, J. · Stierum, R. · Muijser, H. · Arts, J.H.
Keywords: Biology · Toxicology and Applied Pharmacology · Allergen · Immunoglobulin E · Phthalic anhydride · Toll like receptor · Trimellitic anhydride · Analysis of variance · Animal · Article · Blood · Brown Norway rat · Cluster analysis · DNA microarray · Drug effect · Female · Gene expression profiling · Genetics · Immunohistochemistry · Lung · Lung lavage · Metabolism · Nonparametric test · Pathology · Principal component analysis · Proteomics · Rat · Respiratory tract allergy · Signal transduction · Allergens · Analysis of Variance · Animals · Bronchoalveolar Lavage · Cluster Analysis · Female · Gene Expression Profiling · Immunoglobulin E · Immunohistochemistry · Lung · Oligonucleotide Array Sequence Analysis · Phthalic Anhydrides · Principal Component Analysis · Proteomics · Rats · Rats, Inbred BN · Respiratory Hypersensitivity · Signal Transduction · Statistics, Nonparametric · Toll-Like Receptors
[Abstract]

15 A sandwich-cultured rat hepatocyte system with increased metabolic competence evaluated by gene expression profiling
article 2007    
Author: Kienhuis, A.S. · Wortelboer, H.M. · Maas, W.J. · Herwijnen, M. van · Kleinjans, J.C.S. · Delft, J.H.M. van · Stierum, R.H.
Keywords: Biology · Biomedical Research · Gene expression profiling · In vitro models · Metabolic competence · Primary rat hepatocytes · Sandwich-culture · beta naphthoflavone · cytochrome P450 · dexamethasone · phenobarbital · animal cell · article · cell culture · culture medium · enzyme activity · gene expression · gene expression profiling · in vitro study · in vivo study · liver · liver cell · male · metabolic capacity · model · nonhuman · nucleotide sequence · rat · Actins · Animals · Biotransformation · Cytochrome P-450 Enzyme System · Cytological Techniques · Data Interpretation, Statistical · Gene Expression Profiling · Hepatocytes · Hydroxylation · Male · Nucleic Acid Hybridization · Oligonucleotide Array Sequence Analysis · Rats · Rats, Wistar · Reverse Transcriptase Polymerase Chain Reaction · RNA · Testosterone · Rattus
[Abstract]

16 Wnt but not BMP signaling is involved in the inhibitory action of sclerostin on BMP-stimulated bone formation
article 2007    
Author: Bezooijen, R.L. van · Svensson, J.P. · Eefting, D. · Visser, A. · Horst, G. van der · Karperien, M. · Quax, P.H.A. · Vrieling, H. · Papapoulos, S.E. · Dijke, P. ten · Löwik, W.G.M.C.
Keywords: Biology · Biomedical Research · BMP · Bone formation · Microarray · Sclerostin · Signal transduction · SOST · Wnt · Bone morphogenetic protein · Dickkopf 1 protein · Glycoprotein · Growth factor · Protein inhibitor · Sclerostin · Wnt protein · Animal cell · Animal experiment · Animal tissue · Bone disease · Bone mass · Cell differentiation · Controlled study · DNA microarray · Electroporation · Embryo · Expression vector · Gastrocnemius muscle · Gene · Gene expression profiling · Gene targeting · Genetic transcription · Human · Human cell · In vivo study · Male · Mouse · Nonhuman · Ossification · Osteoblast · Osteocyte · Osteosclerosis · Protein family · Reporter gene · Signal transduction · SOST gene · Van buchem disease · Animals · Bone Development · Bone Morphogenetic Proteins · Cells, Cultured · Electroporation · Gene Expression Regulation · Genes, Reporter · Genetic Markers · Humans · Mesoderm · Mice · Muscle, Skeletal · Oligonucleotide Array Sequence Analysis · Recombinant Proteins · Signal Transduction · Transfection · Wnt Proteins
[Abstract]

17 Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: Implications for transcriptomics studies
article 2007    
Author: Ballerstedt, H. · Volkers, R.J.M. · Mars, A.E. · Hallsworth, J.E. · Santos, V.A.M.D. · Puchalka, J. · Duuren, J. van · Eggink, G. · Timmis, K.N. · Bont, J.A.M. de · Wery, J.
Keywords: Biology · Biotechnology · Genomotyping · Pseudomonas putida · Solvent-tolerant bacteria · Transcriptomics · Bacteria · Genes · Microarrays · Oligonucleotides · Proteins · Solvents · Genomotyping · Microarray hybridizations · Pseudomonas putida · Solvent tolerant bacteria · Transcriptomics · DNA · bacterial DNA · bacterial protein · genomic DNA · array · bacterium · catabolism · DNA fingerprinting · gene · hybridization · metabolism · phylogeny · protein · article · bacterial genome · bacterial strain · bacterium culture · cell function · comparative study · controlled study · DNA hybridization · DNA microarray · genetic strain · genome analysis · genotype · microarray analysis · molecular phylogeny · nonhuman · protein degradation · protein metabolism · proteomics · Pseudomonas · pseudomonas monteilii · Pseudomonas putida · reliability · transcriptomics · Genome, Bacterial · Genomics · Oligonucleotide Array Sequence Analysis · Phylogeny · Pseudomonas putida · RNA · Pseudomonas · Pseudomonas monteilii · Pseudomonas putida
[Abstract]

18 Determination of the relationship between group A streptococcal genome content, M type, and toxic shock syndrome by a mixed genome microarray
article 2007    
Author: Vlaminckx, B.J.M. · Schuren, F.H.J. · Montijn, R.C. · Caspers, M.P.M. · Fluit, A.C. · Wannet, W.J.B. · Schouls, L.M. · Verhoef, J. · Jansen, W.T.M.
Keywords: Biology · Biotechnology · citric acid · collagen binding factor · complement inhibiting protein · exotoxin · ferric ion · fibrinogen binding factor · iron binding protein · lyase · speA protein · virulence factor · article · bacterial strain · bacterial virulence · bacteriophage · controlled study · DNA fingerprinting · DNA microarray · gene identification · genetic association · genetic code · genetic variability · genome · genomics · human · hypoxia · major clinical study · microbial diversity · Netherlands · nucleotide sequence · priority journal · Streptococcus group A · toxic shock syndrome · Antigens, Bacterial · Bacterial Outer Membrane Proteins · Bacterial Proteins · Carrier Proteins · Electrophoresis, Gel, Pulsed-Field · Gene Expression Profiling · Genome, Bacterial · Humans · Image Processing, Computer-Assisted · Oligonucleotide Array Sequence Analysis · Shock, Septic · Streptococcal Infections · Streptococcus pyogenes · Virulence Factors
[Abstract]

19 A Bifidobacterium mixed-species microarray for high resolution discrimination between intestinal bifidobacteria
article 2009    
Author: Boesten, R.J. · Schuren, F.H.J. · Vos, W.M.de
Keywords: Biology · Biotechnology · Bifidobacterium · DNA-DNA hybridization · Genomic comparison · Microarray · bacterial DNA · RNA 16S · article · bacterial genome · bacterium identification · Bifidobacterium · Bifidobacterium adolescentis · Bifidobacterium animalis · Bifidobacterium bifidum · Bifidobacterium catenulatum · Bifidobacterium longum · Bifidobacterium pseudolongum · DNA DNA hybridization · DNA microarray · intestine flora · nonhuman · nucleotide sequence · priority journal · species identification · unindexed sequence · Animals · Bacterial Typing Techniques · Bifidobacterium · Cluster Analysis · Comparative Genomic Hybridization · DNA, Bacterial · Genome, Bacterial · Genomic Library · Intestines · Oligonucleotide Array Sequence Analysis · Phylogeny · RNA, Ribosomal, 16S · Species Specificity · Bifidobacterium · Bifidobacterium adolescentis · Bifidobacterium animalis · Bifidobacterium animalis subsp. animalis · Bifidobacterium animalis subsp. lactis · Bifidobacterium bifidum · Bifidobacterium catenulatum · Bifidobacterium longum · Bifidobacterium pseudolongum · Mammalia
[Abstract]

20 Genome-wide DNA microarray analysis of Francisella tularensis strains demonstrates extensive genetic conservation within the species but identifies regions that are unique to the highly virulent F. tularensis subsp. tularensis
article 2003    
Author: Broekhuijsen, M.P. · Larsson, P. · Johansson, A. · Byström, M. · Eriksson, U. · Larsson, E. · Prior, R.G. · Sjöstedt, A. · Titball, R.W. · Forsman, M.
Keywords: Biology · Bacterial DNA · Bacterial genetics · Bacterial strain · Bacterial virulence · Cluster analysis · Controlled study · DNA determination · DNA library · DNA microarray · DNA sequence · Francisella tularensis · Genetic conservation · Genome analysis · Geography · Hybridization · Japan · Molecular cloning · Nonhuman · Nucleotide sequence · Open reading frame · Polymerase chain reaction · Priority journal · Tularemia · Bacterial Proteins · Base Sequence · Cluster Analysis · Conserved Sequence · Francisella tularensis · Gene Expression Profiling · Genome, Bacterial · Humans · Molecular Sequence Data · Oligonucleotide Array Sequence Analysis · Sequence Analysis, DNA · Virulence · Bacteria (microorganisms) · Francisella · Francisella tularensis · Francisella tularensis subsp. holarctica · Francisella tularensis subsp. mediasiatica · Francisella tularensis subsp. novicida · Francisella tularensis subsp. tularensis · Negibacteria · Bacterial Proteins
[PDF] [Abstract]

Search results also available in MS Excel format.

Showing 1 to 20 of 32 found. Next | Sort by date