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1 Insertion sequence-driven diversification creates a globally dispersed emerging multiresistant subspecies of E. faecium
article 2007    
Author: Leavis, H.L. · Willems, R.J.L. · Wamel, W.J.B. van · Schuren, F.H. · Caspers, M.P.M. · Bonten, M.J.M.
Keywords: Biology · Biotechnology · membrane protein · article · bacterium isolate · controlled study · Enterococcus faecium · gene insertion sequence · gene sequence · gene transfer · genetic recombination · genetic variability · human · hybridization · microarray analysis · nonhuman · phylogeny · regulator gene · Animalia · Enterococcus faecium
[PDF] [Abstract]

2 Defining best practice for microarray analyses in nutrigenomic studies
article 2005    
Author: Garosi, P. · Filippo, C. de · Erk, M. van · Rocca-Serra, P. · Sansone, S.A. · Elliott, R.
Keywords: Nutrition · Biomedical Research · Experimental design · Microarrays · Standardisation · Statistical analysis · diet · image analysis · microarray analysis · nutrigenomics · nutrition · RNA extraction · standardization · statistical analysis · animal · DNA microarray · image processing · methodology · Animals · Data Interpretation, Statistical · Gene Expression Profiling · Genome · Humans · Image Processing, Computer-Assisted · Nutrition Physiology · Oligonucleotide Array Sequence Analysis
[PDF] [Abstract]

3 A user-friendly workflow for analysis of Illumina gene expression bead array data available at the arrayanalysis.org portal
article 2015    
Author: Goelela, V.S. · Kelder, T. · Adriaens, M.E. · Evelo, C.T. · Radonijc, M.
Keywords: Biology · Microarray · Illumina bead array · Transcriptomics · Data analysis; Normalization · Quality control · Data analysis · Normalization · Computer interface · Effect size · Gene expression · Human · Illumina bead array · Microarray analysis · Statistical analysis · Workflow · Biomedical Innovation · Healthy Living · Life · MSB - Microbiology and Systems Biology · ELSS - Earth, Life and Social Sciences
[PDF] [Abstract]

4 Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA
article 2007    
Author: Nueda, M.J. · Conesa, A. · Westerhuis, J.A. · Hoefsloot, H.C.J. · Smilde, A.K. · Talón, M. · Ferrer, A.
Keywords: Biology · Analytical research · analysis of variance · article · bioinformatics · correlation analysis · data base · gene expression profiling · genetic selection · genetic transcription · mathematical analysis · microarray analysis · nonhuman · priority journal · simultaneous component analysis · statistical analysis · time series analysis · Algorithms · Analysis of Variance · Computational Biology · Computer Simulation · Data Interpretation, Statistical · Gene Expression Profiling · Models, Genetic · Models, Statistical · Oligonucleotide Array Sequence Analysis · Principal Component Analysis · Time Factors · Transcription, Genetic
[Abstract]

5 Quenching of microbial samples for increased reliability of microarray data
article 2006    
Author: Pieterse, B. · Jellema, R.H. · Werf, M.J. van der
Keywords: Biology · Biotechnology · Microarray data · Microbial samples · Quenching · messenger RNA · transcriptome · article · cytolysis · gene · hybridization · image analysis · Lactobacillus plantarum · microarray analysis · nonhuman · operon · priority journal · RNA isolation · steady state · technique · Lactobacillus · Methanol · Protein Array Analysis · Reproducibility of Results · RNA, Bacterial · RNA, Messenger · Transcription, Genetic · Lactobacillus plantarum
[Abstract]

6 Genome Analysis of Legionella pneumophila Strains Using a Mixed-Genome Microarray
article 2012    
Author: Euser, S.M. · Nagelkerke, N.J. · Schuren, F. · Jansen, R. · Boer, J.W. den
Keywords: Biology · bacterial genome · bacterial strain · bacterial virulence · bacterium identification · bacterium isolation · epidemic · genetic marker · genome analysis · genotype · infection control · Legionella pneumophila · microarray analysis · mixed genome microarray · Netherlands · nonhuman · predictive validity · strain difference · Biomedical Innovation · Healthy Living · Life · MSB - Microbiology and Systems Biology · EELS - Earth, Environmental and Life Sciences
[PDF] [Abstract]

7 Genomic diversity within the enterobacter cloacae complex
article 2008    
Author: Paauw, A. · Caspers, M.P.M. · Schuren, F.H.J. · Leverstein-van Hall, M.A. · Delétoile, A. · Montijn, R.C. · Verhoef, J. · Fluit, A.C.
Keywords: Biology · Cladistics · comparative genomic hybridization · Enterobacter hormaechei · microarray analysis · molecular evolution · multilocus sequence typing · species comparison · species identification · bacterial genome · DNA sequence · nucleic acid hybridization · phylogeny · Enterobacter · Enterobacter cloacae · Genetic Variation · Genome, Bacterial · Genotype · Nucleic Acid Hybridization · Phylogeny · Sequence Analysis, DNA · Food and Nutrition · Healthy Living
[PDF] [Abstract]

8 Interlaboratory and interplatform comparison of microarray gene expression analysis of HepG2 cells exposed to benzo(a)pyrene
article 2009    
Author: Hockley, S.L. · Mathijs, K. · Staal, Y.C.M. · Brewer, D. · Giddings, I. · Delft, J.H.M. van · Phillips, D.H.
Keywords: Biology · Toxicology and Applied Pharmacology · benzo[a]pyrene · RNA · article · cell strain HepG2 · correlation analysis · data analysis · DNA microarray · false negative result · gene expression profiling · human · human cell · intermethod comparison · laboratory · microarray analysis · nucleotide sequence · principal component analysis · priority journal · quantitative assay · real time polymerase chain reaction · transcriptomics · validation process
[Abstract]

9 Chronic quercetin exposure affects fatty acid catabolism in rat lung
article 2006    
Author: Boer, V.C.J. de · Schothorst, E.M. van · Dihal, A.A. · Woude, H. van der · Arts, I.C.W. · Rietjens, I.M.C.M. · Hollman, P.C.H. · Keijer, J.
Keywords: Biomedical Research · Fatty acid metabolism · Flavonoids · Microarray · Nutrigenomics · Polyphenols · Quercetin · fatty acid · quercetin · animal experiment · article · catabolism · controlled study · diet · genomics · health · ketogenesis · lung parenchyma · male · microarray analysis · nonhuman · nucleotide sequence · oxidation · quantitative analysis · rat · real time polymerase chain reaction · unindexed sequence · upregulation · Animals · Diet · Fatty Acids · Gene Expression Regulation · Lung · Male · Oligonucleotide Array Sequence Analysis · Quercetin · Rats · Rats, Inbred F344
[Abstract]

10 A combined transcriptomics and lipidomics analysis of subcutaneous, epididymal and mesenteric adipose tissue reveals marked functional differences
article 2010    
Author: Caesar, R. · Manieri, M. · Kelder, T. · Boekschoten, M. · Evelo, C. · Müller, M. · Kooistra, T. · Cinti, S. · Kleemann, R. · Drevon, C.A.
Keywords: Biology · Biomedical Research · Acetyl coenzyme A · Adenosine triphosphate citrate lyase · Androgen receptor · Carbohydrate responsive element binding protein · Fatty acid synthase · Linoleic acid · Linolenic acid · Monounsaturated fatty acid · Omega 3 fatty acid · Omega 6 fatty acid · Transcription factor · Unclassified drug · Abdominal fat · Adipocyte · Animal cell · Animal tissue · Controlled study · Down regulation · Epididymis fat · Fat intake · Fatty acid desaturation · Fatty acid synthesis · Gene expression regulation · Lipid diet · Lipid metabolism · Lipid storage · Lipidomics · Lipogenesis · Male · Microarray analysis · Mouse · Nonhuman · Spermatogenesis · Subcutaneous fat · Transcriptomics
[PDF] [Abstract]

11 The impact of functional genomics on microbiological food quality and safety
article 2006    
Author: Brul, S. · Schuren, F. · Montijn, R. · Keijser, B.J.F. · Spek, H. van der · Oomes, S.J.C.M.
Keywords: Biotechnology · Bacterial spore formers · Food preservation · Food processing · Genomics · Models · Resistance · amplified fragment length polymorphism · Bacillus subtilis · DNA microarray · DNA screening · food quality · food safety · functional genomics · gene sequence · heat tolerance · microbiological examination · molecular dynamics · nonhuman · quality control · sporogenesis · Bacillus subtilis · Colony Count, Microbial · Consumer Product Safety · Food Contamination · Food Microbiology · Genetic Markers · Heat · Humans · Microarray Analysis · Polymorphism, Restriction Fragment Length · Spores, Bacterial · Bacillus subtilis · Bacteria (microorganisms)
[Abstract]

12 Aspergillus niger RhaR, a regulator involved in L-rhamnose release and catabolism
article 2014    
Author: Gruben, B.S. · Zhou, M. · Wiebenga, A. · Ballering, J. · Overkamp, K.M. · Punt, P.J. · Vries, R.P. de
Keywords: Biology · Aspergillus niger · L-rhamnose catabolism · L-rhamnose release · Pectin degradation · Transcriptional regulation · Aspergillus · Encoding (symbols) · Industrial applications · Metabolism · Down-regulation · Filamentous fungi · L-rhamnose · Regulatory genes · Rhamnogalacturonan-I · Small reduction · Gene encoding · Galacturonic acid · Pectin · Pectin lyase · Polygalacturonase · Rhamnose · Biodegradation · Catabolism · Enzyme activity · Genome · Growth rate · Amino acid sequence · Carbohydrate metabolism · Carbon source · DNA flanking region · Fungal gene · Fungal genome · Fungal strain · Fungus culture · Fungus growth · Gene expression · Gene identification · Gene inactivation · Microarray analysis · Mycelium · Nonhuman · Orthology · Regulator gene · RhaR gene · Transcription regulation · Fungi · Food and Nutrition · Healthy Living · Life · MSB - Microbiology and Systems Biology · ELSS - Earth, Life and Social Sciences
[Abstract]

13 Anacetrapib reduces (V)LDL-cholesterol by inhibition of CETP activity and reduction of plasma PCSK9
article 2015    
Author: Tuin, S.J. van der · Kühnast, S. · Berbée, J. · Verschuren, L. · Pieterman, E.J. · Havekes, L.M. · Hoorn, J.W. van der · Rensen, P.C. · Jukema, J.W. · Princen, H.M. · Willems van Dijk, K. · Wang, Y.
Keywords: Health · CETP · Cholesterol · Metabolism · Drug therapy · Hypolipidemic drugs · LDL · Metabolism · Lipids · Lipoproteins · PCSK9 · Anacetrapib · Apolipoprotein B · Cholesterol ester transfer protein · Low density lipoprotein receptor · Proprotein convertase subtilisin kexin type 9 · RNA · Serine proteinase · Sterol regulatory element binding protein 1 · Sterol regulatory element binding protein 2 · Triacylglycerol · Unclassified drug · Very low density lipoprotein cholesterol · Animal experiment · Animal tissue · Atherosclerosis · Cholesterol synthesis · Controlled study · Down regulation · Drug mechanism · Enzyme blood level · Female · Liver · Microarray analysis · Mouse · Nonhuman · Polymerase chain reaction · Protein expression · RNA isolation · Western diet · Biomedical Innovation · Healthy Living · Life · MHR - Metabolic Health Research MSB - Microbiology and Systems Biology · ELSS - Earth, Life and Social Sciences
[PDF] [Abstract]

14 Early gene expression changes during embryonic stem cell differentiation into cardiomyocytes and their modulation by monobutyl phthalate
article 2009    
Author: Dartel, D.A.M. van · Pennings, J.L.A. · Hendriksen, P.J.M. · Schooten, F.J. van · Piersma, A.H.
Keywords: Alternative test method · Differentiation · Embryonic stem cells · Monobutyl phthalate · Transcriptomics · monobutyl phthalic acid · oligonucleotide · phthalic acid · RNA · Unclassified drug · Animal cell · Cell differentiation · Cell proliferation · Controlled study · Embryonic stem cell · Gene control · Heart muscle cell · Mesoderm · Microarray analysis · Modulation · Mouse · Nonhuman · Pluripotent stem cell · Animals · Cell Differentiation · Cell Proliferation · Cells, Cultured · Dose-Response Relationship, Drug · Embryonic Stem Cells · Gene Expression Profiling · Gene Expression Regulation, Developmental · Gene Regulatory Networks · Mice · Muscle Contraction · Myocytes, Cardiac · Oligonucleotide Array Sequence Analysis · Phthalic Acids · Risk Assessment · Time Factors · Toxicity Tests
[Abstract]

15 Toxicogenomics directory of chemically exposed human hepatocytes
article 2014    
Author: Grinberg, M. · Stöber, R.M. · Edlund, K. · Rempel, E. · Godoy, P. · Reif, R. · Widera, A. · Madjar, K. · Schmidt-Heck, W. · Marchan, R. · Sachinidis, A. · Spitkovsky, D. · Hescheler, J. · Carmo, H. · Arbo, M.D. · Water, B. van de · Wink, S. · Vinken, M. · Rogiers, V. · Escher, S. · Hardy, B. · Mitic, D. · Myatt, G. · Waldmann, T. · Mardinoglu, A. · Damm, G. · Seehofer, D. · Nüssler, A. · Weiss, T.S. · Oberemm, A. · Lampen, A. · Schaap, M.M. · Luijten, M. · van Steeg, H. · Thasler, W.E. · Kleinjans, J.C.S. · Stierum, R.H. · Leist, M. · Rahnenführer, J. · Hengstler, J.G.
Keywords: Biology · Bioinformatics · Biomarker identification · Cirrhosis · Hepatocellular cancer · Hepatotoxicity · In vivo validation · SEURAT-1 · Steatosis · Toxicotranscriptomics · Unsupervised clustering · allyl alcohol · biological marker · chemical compound · cytochrome P450 1A1 · cytochrome P450 3A4 · galactosamine · isoniazid · ketoconazole · liver protein · paracetamol · propranolol · thyroid hormone · transcription factor · triazolam · valproic acid · binding site · cell stress · data base · down regulation · fatty liver · gene expression · gene ontology · human · liver cell · liver cell carcinoma · liver cirrhosis · liver disease · microarray analysis · mutation · nonalcoholic fatty liver · quantitative analysis · real time polymerase chain reaction · RNA extraction · toxicogenomics · transcriptomics · upregulation · Biomedical Innovation · Healthy Living · Life · RAPID - Risk Assessment Products in Development · ELSS - Earth, Life and Social Sciences
[Abstract]

16 Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: Implications for transcriptomics studies
article 2007    
Author: Ballerstedt, H. · Volkers, R.J.M. · Mars, A.E. · Hallsworth, J.E. · Santos, V.A.M.D. · Puchalka, J. · Duuren, J. van · Eggink, G. · Timmis, K.N. · Bont, J.A.M. de · Wery, J.
Keywords: Biology · Biotechnology · Genomotyping · Pseudomonas putida · Solvent-tolerant bacteria · Transcriptomics · Bacteria · Genes · Microarrays · Oligonucleotides · Proteins · Solvents · Genomotyping · Microarray hybridizations · Pseudomonas putida · Solvent tolerant bacteria · Transcriptomics · DNA · bacterial DNA · bacterial protein · genomic DNA · array · bacterium · catabolism · DNA fingerprinting · gene · hybridization · metabolism · phylogeny · protein · article · bacterial genome · bacterial strain · bacterium culture · cell function · comparative study · controlled study · DNA hybridization · DNA microarray · genetic strain · genome analysis · genotype · microarray analysis · molecular phylogeny · nonhuman · protein degradation · protein metabolism · proteomics · Pseudomonas · pseudomonas monteilii · Pseudomonas putida · reliability · transcriptomics · Genome, Bacterial · Genomics · Oligonucleotide Array Sequence Analysis · Phylogeny · Pseudomonas putida · RNA · Pseudomonas · Pseudomonas monteilii · Pseudomonas putida
[Abstract]

17 Multivariate analysis of microarray data by principal component discriminant analysis: Prioritizing relevant transcripts linked to the degradation of different carbohydrates in Pseudomonas putida S12
article 2006    
Author: Werf, M.J. van der · Pieterse, B. · Luijk, N. van · Schuren, F. · Werff van der - Vat, B. van der · Overkamp, K. · Jellema, R.H.
Keywords: Biology · Biotechnology · bacterial RNA · cytochrome · fructose · gluconic acid · glucose · glucose dehydrogenase · iron · quinone derivative · succinic acid · article · bacterial gene · bacterium culture · carbohydrate metabolism · carbon source · cluster analysis · controlled study · discriminant analysis · down regulation · fermentation medium · fructose metabolism · gene identification · genetic transcription · glucose metabolism · intermethod comparison · metabolic regulation · microarray analysis · molecular cloning · multivariate analysis · nonhuman · plots and curves · principal component analysis · priority journal · Pseudomonas putida · regulatory mechanism · respiratory chain · RNA analysis · RNA isolation · transcriptomics · upregulation · Carbohydrate Metabolism · Culture Media · Genes, Bacterial · Multivariate Analysis · Oligonucleotide Array Sequence Analysis · Pseudomonas putida · Bacteria (microorganisms) · Pseudomonas putida
[Abstract]

18 The probiotic mixture VSL#3 has differential effects on intestinal immune parameters in healthy female BALB/c and C57BL/6 mice
article 2015    
Author: Mariman, R. · Tielen, F. · Koning, F. · Nagelkerken, L.
Keywords: Biology · Flow cytometry · Host genetics · Immune modulation · Microarray · Probiotics · Chemokine receptor CCR5 · Chemokine receptor CXCR3 · Eosinophil peroxidase · Gamma interferon inducible protein 10 · Interleukin 12 receptor beta1 · Retinoid related orphan receptor gamma · Transcription factor GATA 3 · VSL3 · Adaptive immunity · Animal experiment · Colon · Controlled study · Female · Gene expression · Genetic variability · Homeostasis · Immunomodulation · Innate immunity · Intestine mucosa · Major histocompatibility complex · Mesentery lymph node · Microarray analysis · Mouse · Mouse strain · Nonhuman · Phenotype · Principal component analysis · Protein expression · Single drug dose · Small intestine · Upregulation · Mus · Biomedical Innovation · Healthy Living · Life · MHR - Metabolic Health Research · ELSS - Earth, Life and Social Sciences
[Abstract]

19 Bromobenzene-induced hepatotoxicity at the transcriptome level
article 2004    
Author: Heijne, W.H.M. · Slitt, A.L. · Bladeren, P.J. van · Groten, J.P. · Klaassen, C.D. · Stierum, R.H. · Ommen, B. van
Keywords: Biology Toxicology · Physiological Sciences · Bromobenzene · cDNA microarray · Hepatotoxicity · Rat · Toxicogenomics · Transcriptomics · Bromobenzene · Cholesterol · Complementary DNA · Cytochrome P450 4A · Fatty acid · Glutathione · Messenger RNA · Metallothionein · Protein · Sterol · Acute phase response · Animal experiment · Animal model · Animal tissue · Cell communication · Cholesterol metabolism · Concentration response · Controlled study · Cytoskeleton · DNA determination · DNA microarray · DNA responsive element · Drug metabolism · Electron · Fatty acid metabolism · Gene amplification · Gene expression profiling · Gene rearrangement · Liver toxicity · Nonhuman · Nucleotide sequence · Oxidative stress · Protein depletion · Protein metabolism · Protein synthesis · Rat · Signal transduction · Transcription regulation · Animals · Bromobenzenes · Gene Expression Profiling · Gene Expression Regulation · Glutathione · Hepatitis, Toxic · Liver · Male · Microarray Analysis · Oligonucleotide Array Sequence Analysis · Rats · Rats, Inbred Strains · Time Factors · Transcription, Genetic
[Abstract]

20 Mixed-species genomic microarray analysis of fecal samples reveals differential transcriptional responses of bifidobacteria in breast- And formula-fed infants
article 2009    
Author: Klaassens, E.S. · Boesten, R.J. · Haarman, M. · Knol, J. · Schuren, F.H. · Vaughan, E.E. · Vos, W.M.de
Keywords: Biology · Biotechnology · Bifidobacteria · Bifidobacterium · Breast milk · Carbohydrate metabolism · Denaturing gradient gel electrophoresis · Exopolysaccharide · Fecal samples · Fructo-oligosaccharides · Human guts · In-vivo · Metabolic activity · Microarray analysis · Mixed species · Nucleotide sequences · Protein-encoding genes · Quantitative PCR · Quantitative real time PCR · Related functions · RRna genes · Sequence analysis · Species diversity · Transcriptional response · Carbohydrates · Electrophoresis · Encoding (symbols) · Functional groups · Gelation · Metabolism · Nucleic acids · Polysaccharides · RNA · Genes · bacterial RNA · exopolysaccharide · folic acid · fructose oligosaccharide · galactose oligosaccharide · ribosome RNA · abundance · bacterium · feces · gene expression · genomics · hominid · metabolism · polymerase chain reaction · real time · RNA · sugar · article · artificial milk · bacterial metabolism · Bifidobacteriaceae · breast milk · carbohydrate metabolism · denaturing gradient gel electrophoresis · feces analysis · gene expression regulation · gene sequence · human · human experiment · in vivo study · infant · intestine · microarray analysis · microbial community · microbial diversity · normal human · nucleotide sequence · polymerase chain reaction · quantitative analysis · real time polymerase chain reaction · RNA hybridization · RNA isolation · species diversity · transcription regulation · bacterial count · Bifidobacterium · biodiversity · classification · diet · DNA fingerprinting · DNA microarray · feces · gene expression profiling · genetics · microbiology · Bifidobacterium · Bifidobacterium · Biodiversity · Colony Count, Microbial · Diet · DNA Fingerprinting · Feces · Gene Expression Profiling · Humans · Infant · Infant Formula · Milk, Human · Oligonucleotide Array Sequence Analysis
[PDF] [Abstract]

Search results also available in MS Excel format.

Showing 1 to 20 of 24 found. Next | Sort by date