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1 Analysis of temporal gene expression during Bacillus subtilis spore germination and outgrowth
article 2007    
Author: Keijser, B.J.F. · Beek, A. ter · Rauwerda, H. · Schuren, F. · Montijn, R. · Spek, H. van der · Brul, S.
Keywords: Biology · Biotechnology · Cell division · Cell growth · DNA repair · DNA replication · Microscopy · Spore germination · Sporogenesis · Transcription regulation · Bacillus subtilis · Gene Expression · Gene Expression Profiling · Oligonucleotide Array Sequence Analysis · RNA, Bacterial · RNA, Messenger · Spores, Bacterial · Time Factors · Transcription, Genetic · Bacillus subtilis
[Abstract]

2 Development of an androgen reporter gene assay (AR-LUX) utilizing a human cell line with an endogenously regulated androgen receptor
article 2001    
Author: Blankvoort, B.M.G. · Groene, E.M. de · Meeteren-Kreikamp, A.P. van · Witkamp, R.F. · Rodenburg, R.J.T. · Aarts, J.M.M.J.G.
Keywords: Nutrition · Aldosterone · Androgen · Androgen receptor · Androstanolone · Bolasterone · Dexamethasone · Epigallocatechin gallate · Estradiol · Forskolin · Luciferase · Progesterone · Retinoic acid · Trenbolone · Vitamin D · Assay · Cancer cell culture · Controlled study · Genetic transcription · Genetic transfection · Human · Human cell · Priority journal · Reliability · Reporter gene · Transcription regulation · Validation process · Aldosterone · Androgens · Breast Neoplasms · Dexamethasone · Down-Regulation · Estradiol · Genes, Regulator · Genes, Reporter · Humans · Luciferases · Metribolone · Receptors, Androgen · Transfection · Tumor Cells, Cultured
[Abstract]

3 Cell-type specific DNA-protein interactions at the tissue-type plasminogen activator promoter in human endothelial and HeLa cells in vivo and in vitro
article 1997    
Author: Arts, J. · Herr, I. · Lansink, M. · Angel, P. · Kooistra, T.
Keywords: Health · Phorbol 13 acetate 12 myristate · Endothelium cell · Gel mobility shift assay · Gene control · Gene expression · Human cell · Oncogene c fos · Oncogene c jun · Promoter region · Protein dna interaction · Transcription regulation · CCAAT-Enhancer-Binding Proteins · DNA Footprinting · DNA Primers · DNA-Binding Proteins · Electrophoresis, Polyacrylamide Gel · Endopeptidases · Endothelium · Gene Expression Regulation · Hela Cells · Humans · NFI Transcription Factors · Nuclear Proteins · Oncogene Proteins · Oncogene Proteins, Fusion · Polymerase Chain Reaction · Promoter Regions (Genetics) · Tetradecanoylphorbol Acetate · Tissue Plasminogen Activator · Transcription Factors · Umbilical Cord · Murinae
[Abstract]

4 The untranslated leader sequence of the barley lipoxygenase 1 (Lox1) gene confers embryo-specific expression
article 1998    
Author: Rouster, J. · Mechelen J. van · Cameron-Mills, V.
Keywords: Nutrition · Aleurone · Assay · Chimeric gene · Germination · Lipoxygenase i · Methyl jasmonate · Plant development · Plant genetics · Quantitative genetics · Regulatory sequence · Transcription regulation · Acetic Acids · Base Sequence · Cyclopentanes · DNA, Plant · Enhancer Elements (Genetics) · Gene Expression Regulation, Developmental · Gene Expression Regulation, Enzymologic · Gene Expression Regulation, Plant · Genes, Plant · Genes, Reporter · Germination · Glucuronidase · Hordeum · Lipoxygenase · Molecular Sequence Data · Mutation · Plant Growth Regulators · Plants, Genetically Modified · Embryophyta · Hordeum vulgare subsp. vulgare
[Abstract]

5 Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet
article 2015    
Author: Derous, D. · Kelder, T. · Schothorst, E.M. van · Erk, M. van · Voigt, A. · Klaus, S. · Keijer, J. · Radonjic, M.
Keywords: Adipose tissue · Data integration · High-fat diet · Network analysis · Systems biology · Transcriptional regulation · Transcriptomics · Transforming growth factor beta · Adaptation · Analytic method · Animal tissue · Caloric intake · Cell respiration · Controlled study · Disorders of mitochondrial functions · Down regulation · Epididymis fat · Gene expression · Immune response · Lipid diet · Low fat diet · Male · Metabolic regulation · Mouse · Network analysis · Nonhuman · Organ weight · Signal transduction · Stress · Transcription regulation · White adipose tissue · Murinae · Biomedical Innovation · Healthy Living · Life · MSB - Microbiology and Systems Biology · ELSS - Earth, Life and Social Sciences
[PDF] [Abstract]

6 Insulin suppresses bile acid synthesis in cultured rat hepatocytes by down-regulation of cholesterol 7α-hydroxylase and sterol 27-hydroxylase gene transcription
article 1995    
Author: Twisk, J. · Hoekman, M.F.M. · Lehmann, E.M. · Meijer, P. · Mager, W.H. · Princen, H.M.G.
Keywords: Biology · cholesterol 7alpha monooxygenase · insulin · oxygenase · sterol 27 hydroxylase · unclassified drug · animal cell · article · bile acid synthesis · controlled study · down regulation · enzyme activity · gene expression regulation · hormone action · liver cell culture · nonhuman · transcription regulation · Animal · Bile Acids and Salts · Cells, Cultured · Chloramphenicol O-Acetyltransferase · Cholesterol 7-alpha-Hydroxylase · Cytochrome P-450 Enzyme System · Down-Regulation · Gene Expression Regulation, Enzymologic · Insulin · Liver · Male · Membrane Glycoproteins · Nuclear Proteins · Rats · Rats, Wistar · RNA, Messenger · Steroid Hydroxylases · Support, Non-U.S. Gov't · Transcription, Genetic · Transfection
[Abstract]

7 Mechanism of the slow induction of apolipoprotein A-I synthesis by retinoids in cynomolgus hepatocytes: Involvement of retinoic acid and retinoid X receptors
article 1997    
Author: Kaptein, A. · Neele, D.M. · Twisk, J. · Hendriks, H.F.J. · Kooistra, T. · Princen, H.M.G.
Keywords: Apolipoprotein A-I · Cynomolgus hepatocytes · MRNA · RAP · Receptor-selective ligands · Retinoids · RXR · Transcriptional regulation · apolipoprotein a1 · retinoic acid · retinoid x receptor · animal cell · article · lipogenesis · lipoprotein metabolism · liver cell · liver metabolism · monkey · nonhuman · transcription regulation · Animals · Apolipoprotein A-I · Benzoates · Blotting, Northern · Cells, Cultured · Female · Gene Expression Regulation · Liver · Macaca fascicularis · Male · Receptors, Retinoic Acid · Retinoid X Receptors · Retinoids · RNA, Messenger · Tetrahydronaphthalenes · Time Factors · Trans-Activation (Genetics) · Transcription Factors · Tretinoin
[PDF] [Abstract]

8 Aspergillus niger RhaR, a regulator involved in L-rhamnose release and catabolism
article 2014    
Author: Gruben, B.S. · Zhou, M. · Wiebenga, A. · Ballering, J. · Overkamp, K.M. · Punt, P.J. · Vries, R.P. de
Keywords: Biology · Aspergillus niger · L-rhamnose catabolism · L-rhamnose release · Pectin degradation · Transcriptional regulation · Aspergillus · Encoding (symbols) · Industrial applications · Metabolism · Down-regulation · Filamentous fungi · L-rhamnose · Regulatory genes · Rhamnogalacturonan-I · Small reduction · Gene encoding · Galacturonic acid · Pectin · Pectin lyase · Polygalacturonase · Rhamnose · Biodegradation · Catabolism · Enzyme activity · Genome · Growth rate · Amino acid sequence · Carbohydrate metabolism · Carbon source · DNA flanking region · Fungal gene · Fungal genome · Fungal strain · Fungus culture · Fungus growth · Gene expression · Gene identification · Gene inactivation · Microarray analysis · Mycelium · Nonhuman · Orthology · Regulator gene · RhaR gene · Transcription regulation · Fungi · Food and Nutrition · Healthy Living · Life · MSB - Microbiology and Systems Biology · ELSS - Earth, Life and Social Sciences
[Abstract]

9 Differential modulation by Akkermansia muciniphila and faecalibacterium prausnitzii of host peripheral lipid metabolism and histone acetylation in mouse gut organoids
article 2014    
Author: Lukovac, S. · Belzer, C. · Pellis, L. · Keijser, B.J. · Vos, W.M. de · Montijn, R.C. · Roeselers, G.
Keywords: Biology · G protein coupled receptor 43 · Histone deacetylase · Membrane protein · Peroxisome proliferator activated receptor gamma · Protein Fiaf · Short chain fatty acid · Unclassified drug · Adult · Animal experiment · Animal tissue · Bacterial strain · Cell cycle regulation · Cell metabolism · Controlled study · Down regulation · Epigenetics · Ex vivo study · Fiaf gene · Gene · Gene control · Gene expression · Gene silencing · Gpr43 gene · Hdac3 gene · Hdac5 gene · Histone acetylation · Host pathogen interaction · Ileum · In vivo study · Intestine flora · Lipid metabolism · Lipolysis · Male · Mouse · Nonhuman · Nucleotide sequence · Ppargamma gene · Satiety · Transcription regulation · Akkermansia muciniphila · Faecalibacterium prausnitzii · Biomedical Innovation · Healthy Living · Life · MSB - Microbiology and Systems Biology · ELSS - Earth, Life and Social Sciences
[Abstract]

10 Generation of a catR deficient mutant of P. putida KT2440 that produces cis, cis-muconate from benzoate at high rate and yield
article 2011    
Author: Duuren, J.B.J.H. van · Wijte, D. · Leprince, A. · Karge, B. · Puchalka, J. · Wery, J. · Dos Santos, V.A.P.M. · Eggink, G. · Mars, A.E.
Keywords: Biology · 3-Fluorobenzoate · Benzoate · Catechol 1,2-dioxygenase · Cis, cis-muconate · NTG mutagenesis · P. putida KT2440 · 3-Fluorobenzoate · Benzoate · Catechol 1 ,2-dioxygenase · Cis, cis-muconate · NTG mutagenesis · P. putida KT2440 · Glucose · Mutagenesis · Phenols · Benzoic acid · Transcriptome · Article · DNA binding · Nonhuman · Operon · Priority journal · Pseudomonas putida · Transcription regulation · Pseudomonas putida · Benzoic acid, 532-32-1, 582-25-2, 65-85-0, 766-76-7 · Carbon, 7440-44-0 · Catechol 1,2 dioxygenase, 9027-16-1 · Muconic acid, 505-70-4 · Life · CBRN - CBRN Protection · EELS - Earth, Environmental and Life Sciences
[Abstract]

11 Time series analysis of benzo[a]pyrene-induced transcriptome changes suggests that a network of transcription factors regulates the effects on functional gene sets
article 2010    
Author: Delft, J.H.M. van · Mathijs, K. · Staal, Y.C.M. · Herwijnen, M.H.M. van · Brauers, K.J.J. · Boorsma, A. · Kleinjans, J.C.S.
Keywords: Nutrition · Biomedical Research · Carcinogen · Network · Time series · Transcription factor · Transcriptome · benzo[a]pyrene · immunoglobulin enhancer binding protein · Myc protein · serum response factor · transcription factor · transcription factor AP 1 · transcription factor E2F1 · transcriptome · amino acid metabolism · apoptosis · article · carcinogenesis · cell cycle G1 phase · cell cycle S phase · controlled study · correlation analysis · DNA adduct · DNA repair · down regulation · functional genomics · gene expression · gene regulatory network · hepatoma cell · human · human cell · lipid metabolism · named inventories, questionnaires and rating scales · proto oncogene · Short Time series Expression Miner · signal transduction · time series analysis · transcription regulation · tumor suppressor gene · upregulation
[Abstract]

12 Different control mechanisms regulate glucoamylase and protease gene transcription in Aspergillus oryzae in solid-state and submerged fermentation
article 2005    
Author: Biesebeke, R. te · Biezen, N. van · Vos, W.M. de · Hondel, C.A.M.J.J. van den · Punt, P.J.
Keywords: Biology · Biotechnology · Carbon · Control theory · Crops · Enzymes · Fermentation · Genes · Nitrogen · Gene expressions · Gene transcription · Glucomylase (glaB) · Solid-state fermentation (SSF) · Enzyme kinetics · carbon · glucan 1,4 alpha glucosidase · nitrogen · proteinase · fermentation · gene expression · protein · article · Aspergillus oryzae · controlled study · culture medium · fungus hyphae · gene control · gene expression · liquid culture · molecular mechanics · nonhuman · pH measurement · seed kernel · solid state fermentation · transcription regulation · wheat · Aspergillus oryzae · Biomass · Carbon · Fermentation · Gene Expression Profiling · Gene Expression Regulation, Fungal · Glucan 1,4-alpha-Glucosidase · Glucose · Hydrogen-Ion Concentration · Nitrogen · Peptide Hydrolases · RNA, Fungal · RNA, Messenger · Transcription, Genetic · Triticum · Carbon · Enzymatic Activity · Enzymes · Fermentation · Genes · Nitrogen · Wheat · Aspergillus oryzae · Triticum aestivum
[Abstract]

13 Endoplasmic reticulum stress leads to the selective transcriptional downregulation of the glucoamylase gene in Aspergillus niger
article 2004    
Author: Al-Sheikh, H. · Watson, A.J. · Lacey, G.A. · Punt, P.J. · MacKenzie, D.A. · Jeenes, D.J. · Pakula, T. · Penttilä, M. · Alcocer, M.J.C. · Archer, D.B.
Keywords: Biology · Biotechnology · actin · chaperone · dithiothreitol · gamma actin · glucan 1,4 alpha glucosidase · glyceraldehyde 3 phosphate dehydrogenase · protein HacA · unclassified drug · article · Aspergillus niger · bipa gene · down regulation · endoplasmic reticulum · fungal cell · fungal gene · fungal strain · gene expression · gene induction · genetic code · glaa gene · nonhuman · pdiA gene · priority journal · promoter region · protein folding · protein secretion · RNA splicing · RNA stability · stress · transcription regulation · upregulation · Aspergillus niger · Dithiothreitol · Down-Regulation · Endoplasmic Reticulum · Fungal Proteins · Gene Expression Regulation, Enzymologic · Gene Expression Regulation, Fungal · Glucan 1,4-alpha-Glucosidase · HSP70 Heat-Shock Proteins · Oligonucleotides, Antisense · Promoter Regions (Genetics) · Protein Folding · Transcription, Genetic · Aspergillus · Aspergillus niger · Fungi
[Abstract]

14 Bromobenzene-induced hepatotoxicity at the transcriptome level
article 2004    
Author: Heijne, W.H.M. · Slitt, A.L. · Bladeren, P.J. van · Groten, J.P. · Klaassen, C.D. · Stierum, R.H. · Ommen, B. van
Keywords: Biology Toxicology · Physiological Sciences · Bromobenzene · cDNA microarray · Hepatotoxicity · Rat · Toxicogenomics · Transcriptomics · Bromobenzene · Cholesterol · Complementary DNA · Cytochrome P450 4A · Fatty acid · Glutathione · Messenger RNA · Metallothionein · Protein · Sterol · Acute phase response · Animal experiment · Animal model · Animal tissue · Cell communication · Cholesterol metabolism · Concentration response · Controlled study · Cytoskeleton · DNA determination · DNA microarray · DNA responsive element · Drug metabolism · Electron · Fatty acid metabolism · Gene amplification · Gene expression profiling · Gene rearrangement · Liver toxicity · Nonhuman · Nucleotide sequence · Oxidative stress · Protein depletion · Protein metabolism · Protein synthesis · Rat · Signal transduction · Transcription regulation · Animals · Bromobenzenes · Gene Expression Profiling · Gene Expression Regulation · Glutathione · Hepatitis, Toxic · Liver · Male · Microarray Analysis · Oligonucleotide Array Sequence Analysis · Rats · Rats, Inbred Strains · Time Factors · Transcription, Genetic
[Abstract]

15 Nutrigenomics: The impact of biomics technology on nutrition research
article 2005    
Author: Corthésy-Theulaz, I. · Dunnen, J.T. den · Ferré, P. · Geurts, J.M.W. · Müller, M. · Belzen, N. van · Ommen, B. van
Keywords: Nutrition · Physiological Sciences · Genomics · Metabolomics · Proteomics · Systems biology · Transcriptomics · biological marker · carbohydrate · fatty acid · bioinformatics · biology · biomics · biotechnology · cancer · carbohydrate diet · carbohydrate metabolism · cardiovascular disease · data analysis · disease course · disease predisposition · fatty acid metabolism · food biotechnology · gene control · gene expression regulation · genetic polymorphism · genetic susceptibility · genome analysis · human · metabolomics · molecular dynamics · non insulin dependent diabetes mellitus · nonhuman · nutrient · nutrigenomics · nutritional science · obesity · priority journal · proteomics · review · transcription regulation · transcriptomics · Biotechnology · Energy Metabolism · Gene Expression Regulation · Genome, Human · Genomics · Humans · Nutrition Physiology · Polymorphism, Genetic · Proteomics
[Abstract]

16 Suppression of sterol 27-hydroxylase mRNA and transcriptional activity by bile acids in cultured rat hepatocytes
article 1995    
Author: Twisk, J. · Wit, E.C.M. de · Princen, H.M.G.
Keywords: Biology · bile acid · chenodeoxycholic acid · cholesterol 7alpha monooxygenase · cholic acid · deoxycholic acid · lithocholic acid · messenger rna · oxygenase · sterol · taurocholic acid · animal cell · article · bile acid synthesis · cholesterol metabolism · controlled study · enzyme inhibition · gene repression · liver cell culture · nonhuman · priority journal · rat · transcription regulation · Adenosine Triphosphate · Animal · Bile Acids and Salts · Cells, Cultured · Cholesterol 7-alpha-Hydroxylase · Cytochrome P-450 Enzyme System · Dose-Response Relationship, Drug · Down-Regulation · Gene Expression Regulation, Enzymologic · Liver · Male · Mitochondria · Oxidoreductases · Rats · Rats, Wistar · RNA, Messenger · Steroid Hydroxylases · Support, Non-U.S. Gov't · Taurocholic Acid · Transcription, Genetic
[Abstract]

17 Differential feedback regulation of cholesterol 7α-hydroxylase mRNA and transcriptional activity by rat bile acids in primary monolayer cultures of rat hepatocytes
article 1993    
Author: Twisk, J. · Lehmann, E.M. · Princen, H.M.G.
Keywords: Health · bile acid · chenodeoxycholic acid · cholesterol 7alpha monooxygenase · deoxycholic acid · glycocholic acid · messenger rna · animal cell · bile acid synthesis · controlled study · culture medium · dose time effect relation · down regulation · enzyme activity · enzyme regulation · feedback system · gene expression regulation · gene repression · genetic transcription · hydrophobicity · kinetics · liver cell · liver cell culture · monolayer culture · negative feedback · nonhuman · transcription regulation · Animal · Base Sequence · Bile Acids and Salts · Cells, Cultured · Chenodeoxycholic Acid · Cholesterol 7-alpha-Hydroxylase · Cholic Acid · Cholic Acids · Feedback · Gene Expression Regulation · Glycocholic Acid · Kinetics · Liver · Male · Molecular Sequence Data · Rats · RNA, Messenger · Support, Non-U.S. Gov't · Taurocholic Acid · Transcription, Genetic
[Abstract]

18 Database mining and transcriptional analysis of genes encoding inulin-modifying enzymes of Aspergillus niger
article 2006    
Author: Yuan, X.L. · Goosen, C. · Kools, H. · Maarel, M.J.E.C. van der · Hondel, C.A.M.J.J. van den · Dijkhuizen, L. · Ram, A.F.J.
Keywords: Food technology · cell enzyme · fungal enzyme · glycosidase · inulin · inulin modifying enzyme · sucrose · unclassified drug · article · Aspergillus niger · catabolite repression · controlled study · culture medium · enzyme activity · fungal metabolism · fungal strain · fungus culture · fungus growth · gene sequence · genetic code · genetic transcription · genome · genome analysis · information processing · nonhuman · nucleotide sequence · priority journal · protein analysis · protein expression · sequence analysis · transcription regulation · upregulation · Aspergillus niger · beta-Fructofuranosidase · Blotting, Northern · Computational Biology · DNA, Fungal · Fructose · Gene Expression Regulation, Fungal · Genome, Fungal · Inulin · Molecular Sequence Data · Phylogeny · Protein Sorting Signals · RNA, Fungal · RNA, Messenger · Sequence Homology, Amino Acid · Sucrose · Transcription, Genetic · Aspergillus niger · Fungi
[Abstract]

19 Aspergillus niger genome-wide analysis reveals a large number of novel alpha-glucan acting enzymes with unexpected expression profiles
article 2008    
Author: Yuan, X.-L. · Kaaij, R.M. van der · Hondel, C.A.M.J.J. van den · Punt, P.J. · Maarel, M.J.E.C. van der · Dijkhuizen, L. · Ram, A.F.J.
Keywords: Biology · Alpha-amylase · Alpha-glucan · Alpha-glucosidase · AmyR · Aspergillus niger · Cell wall · Glucoamylase · Maltose · Starch · Starch-binding domain · 1,4 alpha glucan branching enzyme · alpha glucosidase · amylase · cell enzyme · cell membrane protein · fungal protein · glucan 1,4 alpha glucosidase · glycosidase · glycosylphosphatidylinositol · maltose · protein amyr · starch · article · Aspergillus niger · carbohydrate metabolism · carbon source · controlled study · degradation · energy resource · enzymatic degradation · enzyme synthesis · gene expression profiling · gene identification · gene sequence · genetic transcription · genome analysis · microarray analysis · nonhuman · nucleotide sequence · priority journal · transcription regulation · alpha-Amylase · alpha-Glucosidases · Amino Acid Sequence · Aspergillus niger · Base Sequence · Conserved Sequence · Fungal Proteins · Gene Expression Profiling · Gene Expression Regulation, Fungal · Genome, Fungal · Genomics · Glucan 1,4-alpha-Glucosidase · Glycoside Hydrolases · Maltose · Molecular Sequence Data · Phylogeny · Trans-Activators · Transcription, Genetic · Aspergillus niger · Fungi
[Abstract]

20 Transcriptional activity around bacterial cell death reveals molecular biomarkers for cell viability
article 2008    
Author: Kort, R. · Keijser, B.J. · Caspers, M.P.M. · Schuren, F.H. · Montijn, R.
Keywords: Biology · Biotechnology · Bacterial RNA · Ribosome RNA · Biological marker · Article · Bacillus subtilis · Bacterial cell · Bacterial growth · Bacterial membrane · Bacterial reproduction · Cell culture · Cell death · Cell viability · Cellular stress response · Controlled study · Cytology · Gene cluster · Gene expression · Genetic transcription · Growth curve · Heat stress · Nonhuman · Protein folding · RNA stability · Sporogenesis · Transcription regulation · Bacterial count · DNA microarray · Gene expression profiling · Gene expression regulation · Genetics · Growth, development and aging · Heat · Heat shock response · Microbial viability · Multigene family · Physiology · Transcription initiation · Bacillus subtilis · Bacteria (microorganisms) · Posibacteria · Bacillus subtilis · Biological Markers · Colony Count, Microbial · Gene Expression Profiling · Gene Expression Regulation, Bacterial · Heat-Shock Response · Hot Temperature · Microbial Viability · Multigene Family · Oligonucleotide Array Sequence Analysis · RNA Stability · RNA, Bacterial · Transcription, Genetic · Transcriptional Activation
[PDF] [Abstract]

Search results also available in MS Excel format.

Showing 1 to 20 of 25 found. Next | Sort by date