Ivan Yu Chernyshov
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1
Revisiting van der Waals Radii
From Comprehensive Structural Analysis to Knowledge-Based Classification of Interatomic Contacts
Weak noncovalent interactions are responsible for structure and properties of almost all supramolecular systems, such as nucleic acids, enzymes, and pharmaceutical crystals. However, the analysis of their significance and structural role is not straightforward and commonly requires model studies. Herein, we describe an efficient and universal approach for the analysis of noncovalent interactions and determination of van der Waals radii using the line-of-sight (LoS) concept. The LoS allows to unambiguously identify and classify the “direct” interatomic contacts in complex molecular systems. This approach not only provides an improved theoretical base to molecular “sizes” but also enables the quantitative analysis of specificity, anisotropy, and steric effects of intermolecular interactions.
Breaking Linear Scaling Relationships with Secondary Interactions in Confined Space
A Case Study of Methane Oxidation by Fe/ZSM-5 Zeolite
Linear energy scaling laws connect the kinetic and thermodynamic parameters of key elementary steps for heterogeneously catalyzed reactions over defined active sites on open surfaces. Such scaling laws provide a framework for a rapid computational activity screening of families of catalysts, but they also effectively impose a fundamental limit on the theoretically attainable activity. Understanding the limits of applicability of the linear scaling laws is therefore crucial for the development of predictive models in catalysis. In this work, we computationally investigate the role of secondary effects of the active site environment on the reactivity of defined Fe complexes in ZSM-5 zeolite toward methane oxofunctionalization. The computed C-H activation barriers over Fe-sites at different locations inside the zeolite pores generally follow the associated reaction enthalpies and the hydrogen affinities of the active site, reflecting the O-H bond strength. Nevertheless, despite the close similarity of the geometries and intrinsic reactivities of the considered active complexes, substantial deviations from these linear scaling relations are apparent from the DFT calculations. We identify three major factors behind these deviations, namely, (1) confinement effects due to the zeolite micropores, (2) coordinative flexibility, and (3) multifunctionality of the active site. The latter two phenomena impact the mechanism of the catalytic reaction by providing a cooperative reaction channel for the substrate activation or by enabling the stabilization of the intrazeolite complex along the reaction path. These computational findings point to the need for the formulation of multidimensional property-Activity relationships accounting for both the intrinsic chemistry of the reactive ensembles and secondary effects due to their environmental and dynamic characteristics.