JV
Johannes P. Van Dijken
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2 records found
1
Journal article
(1996)
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Peter A. Vanrolleghem, Patricia De Jong-Gubbels, Walter M. Van Gulik, Jack T. Pronk, Johannes P. Van Dijken, Sef Heijnen
Setting up a metabolic network model for respiratory growth of Saccharomyces cerevisiae requires the estimation of only two (energetic) stoichiometric parameters: (1) the operational PO ratio and (2) a growth-related maintenance factor k. It is shown, both theoretically and practically, how chemostat cultivations with different mixtures of two substrates allow unique values to be given to these unknowns of the proposed metabolic model. For the yeast and model considered, an effective PO ratio of 1.09 mol of ATP/mol of O (95% confidence interval 1.07−1.11) and a k factor of 0.415 mol of ATP/C-mol of biomass (0.385−0.445) were obtained from biomass substrate yield data on glucose/ethanol mixtures. Symbolic manipulation software proved very valuable in this study as it supported the proof of theoretical identifiability and significantly reduced the necessary computations for parameter estimation. In the transition from 100% glucose to 100% ethanol in the feed, four metabolic regimes occur. Switching between these regimes is determined by cessation of an irreversible reaction and initiation of an alternative reaction. Metabolic network predictions of these metabolic switches compared well with activity measurements of key enzymes. As a second validation of the network, the biomass yield of S. cerevisiae on acetate was also compared to the network prediction. An excellent agreement was found for a network in which acetate transport was modeled with a proton symport, while passive diffusion of acetate gave significantly higher yield predictions.
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Setting up a metabolic network model for respiratory growth of Saccharomyces cerevisiae requires the estimation of only two (energetic) stoichiometric parameters: (1) the operational PO ratio and (2) a growth-related maintenance factor k. It is shown, both theoretically and practically, how chemostat cultivations with different mixtures of two substrates allow unique values to be given to these unknowns of the proposed metabolic model. For the yeast and model considered, an effective PO ratio of 1.09 mol of ATP/mol of O (95% confidence interval 1.07−1.11) and a k factor of 0.415 mol of ATP/C-mol of biomass (0.385−0.445) were obtained from biomass substrate yield data on glucose/ethanol mixtures. Symbolic manipulation software proved very valuable in this study as it supported the proof of theoretical identifiability and significantly reduced the necessary computations for parameter estimation. In the transition from 100% glucose to 100% ethanol in the feed, four metabolic regimes occur. Switching between these regimes is determined by cessation of an irreversible reaction and initiation of an alternative reaction. Metabolic network predictions of these metabolic switches compared well with activity measurements of key enzymes. As a second validation of the network, the biomass yield of S. cerevisiae on acetate was also compared to the network prediction. An excellent agreement was found for a network in which acetate transport was modeled with a proton symport, while passive diffusion of acetate gave significantly higher yield predictions.
Acetobacter diazotrophicus, a recently isolated nitrogen-fixing acidotolerant acetic acid bacterium, grew well in simple mineral media and exhibited high rates of gluconic acid formation. Glucose oxidation by the organism was less sensitive to low pH values than glucose oxidation by Gluconobacter oxydans. Growth and glucose oxidation were not affected by high gluconic acid concentrations. These observations indicate that A. diazotrophicus is an interesting organism for the industrial production of gluconic acid. The organism exhibited a high maintenance requirements (ms=1.0 mmol glucose h-1 (g dry weight)-1) during glucose-limited growth in chemostat cultures at pH 3.5. Enzyme activities in cell-free extracts suggested that glucose metabolism in A. diazotrophicus proceeds exclusively via the hexose monophosphate pathway: the enzymes of the Embden-Meyerhof and Entner-Doudoroff pathways could not be detected. Both the phosphorylative and direct oxidative pathways of glucose metabolism appeared to be operative. In addition to a pyridine nucleotide (strictly NAD)-dependent glucose dehydrogenase, A. diazotrophicus contained a dye-linked, probably pyrrolo-quinoline quinone (PQQ)-dependent, glucose dehydrogenase. The latter activity seemed to be primarily responsible for gluconic acid formation.
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Acetobacter diazotrophicus, a recently isolated nitrogen-fixing acidotolerant acetic acid bacterium, grew well in simple mineral media and exhibited high rates of gluconic acid formation. Glucose oxidation by the organism was less sensitive to low pH values than glucose oxidation by Gluconobacter oxydans. Growth and glucose oxidation were not affected by high gluconic acid concentrations. These observations indicate that A. diazotrophicus is an interesting organism for the industrial production of gluconic acid. The organism exhibited a high maintenance requirements (ms=1.0 mmol glucose h-1 (g dry weight)-1) during glucose-limited growth in chemostat cultures at pH 3.5. Enzyme activities in cell-free extracts suggested that glucose metabolism in A. diazotrophicus proceeds exclusively via the hexose monophosphate pathway: the enzymes of the Embden-Meyerhof and Entner-Doudoroff pathways could not be detected. Both the phosphorylative and direct oxidative pathways of glucose metabolism appeared to be operative. In addition to a pyridine nucleotide (strictly NAD)-dependent glucose dehydrogenase, A. diazotrophicus contained a dye-linked, probably pyrrolo-quinoline quinone (PQQ)-dependent, glucose dehydrogenase. The latter activity seemed to be primarily responsible for gluconic acid formation.