Peter Slaets
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13 records found
1
Multimodal Freezing of Gait Detection
Analyzing the Benefits and Limitations of Physiological Data
Freezing of gait (FOG) is a debilitating symptom of Parkinson's disease (PD), characterized by an absence or reduction in forward movement of the legs despite the intention to walk. Detecting FOG during free-living conditions presents significant challenges, particularly when using only inertial measurement unit (IMU) data, as it must be distinguished from voluntary stopping events that also feature reduced forward movement. Influences from stress and anxiety, measurable through galvanic skin response (GSR) and electrocardiogram (ECG), may assist in distinguishing FOG from normal gait and stopping. However, no study has investigated the fusion of IMU, GSR, and ECG for FOG detection. Therefore, this study introduced two methods: a two-step approach that first identified reduced forward movement segments using a Transformer-based model with IMU data, followed by an XGBoost model classifying these segments as FOG or stopping using IMU, GSR, and ECG features; and an end-to-end approach employing a multi-stage temporal convolutional network to directly classify FOG and stopping segments from IMU, GSR, and ECG data. Results showed that the two-step approach with all data modalities achieved an average F1 score of 0.728 and F1@50 of 0.725, while the end-to-end approach scored 0.771 and 0.759, respectively. However, no significant difference was found compared to using only IMU data in both approaches (p-values: 0.466 to 0.887). In conclusion, adding physiological data did not provide a statistically significant benefit in distinguishing between FOG and stopping. The limitations may be specific to GSR and ECG data, and may not generalize to other physiological modalities.
The ability to identify and temporally segment fine-grained actions in motion capture sequences is crucial for applications in human movement analysis. Motion capture is typically performed with optical or inertial measurement systems, which encode human movement as a time series of human joint locations and orientations or their higher-order representations. State-of-the-art action segmentation approaches use multiple stages of temporal convolutions. The main idea is to generate an initial prediction with several layers of temporal convolutions and refine these predictions over multiple stages, also with temporal convolutions. Although these approaches capture long-term temporal patterns, the initial predictions do not adequately consider the spatial hierarchy among the human joints. To address this limitation, we recently introduced multi-stage spatial-temporal graph convolutional neural networks (MS-GCN). Our framework replaces the initial stage of temporal convolutions with spatial graph convolutions and dilated temporal convolutions, which better exploit the spatial configuration of the joints and their long-term temporal dynamics. Our framework was compared to four strong baselines on five tasks. Experimental results demonstrate that our framework is a strong baseline for skeleton-based action segmentation.
Freezing of gait assessment with inertial measurement units and deep learning
Effect of tasks, medication states, and stops
Background: Freezing of gait (FOG) is an episodic and highly disabling symptom of Parkinson’s Disease (PD). Traditionally, FOG assessment relies on time-consuming visual inspection of camera footage. Therefore, previous studies have proposed portable and automated solutions to annotate FOG. However, automated FOG assessment is challenging due to gait variability caused by medication effects and varying FOG-provoking tasks. Moreover, whether automated approaches can differentiate FOG from typical everyday movements, such as volitional stops, remains to be determined. To address these questions, we evaluated an automated FOG assessment model with deep learning (DL) based on inertial measurement units (IMUs). We assessed its performance trained on all standardized FOG-provoking tasks and medication states, as well as on specific tasks and medication states. Furthermore, we examined the effect of adding stopping periods on FOG detection performance. Methods: Twelve PD patients with self-reported FOG (mean age 69.33 ± 6.02 years) completed a FOG-provoking protocol, including timed-up-and-go and 360-degree turning-in-place tasks in On/Off dopaminergic medication states with/without volitional stopping. IMUs were attached to the pelvis and both sides of the tibia and talus. A temporal convolutional network (TCN) was used to detect FOG episodes. FOG severity was quantified by the percentage of time frozen (%TF) and the number of freezing episodes (#FOG). The agreement between the model-generated outcomes and the gold standard experts’ video annotation was assessed by the intra-class correlation coefficient (ICC). Results: For FOG assessment in trials without stopping, the agreement of our model was strong (ICC (%TF) = 0.92 [0.68, 0.98]; ICC(#FOG) = 0.95 [0.72, 0.99]). Models trained on a specific FOG-provoking task could not generalize to unseen tasks, while models trained on a specific medication state could generalize to unseen states. For assessment in trials with stopping, the agreement of our model was moderately strong (ICC (%TF) = 0.95 [0.73, 0.99]; ICC (#FOG) = 0.79 [0.46, 0.94]), but only when stopping was included in the training data. Conclusion: A TCN trained on IMU signals allows valid FOG assessment in trials with/without stops containing different medication states and FOG-provoking tasks. These results are encouraging and enable future work investigating automated FOG assessment during everyday life.
— Freezing of gait (FOG) is an episodic and highly disabling symptom of Parkinson’s disease (PD). Although described as a single phenomenon, FOG is heterogeneous and can express as different manifestations, such as trembling in place or complete akinesia. We aimed to analyze the efficacy of deep learning (DL) trained on inertial measurement unit data to classify FOG into both manifestations. We adapted and compared four state-of-the-art FOG detection algorithms for this task and investigated the advantages of incorporating a refinement model to address oversegmentation errors. We evaluated the model’s performance in distinguishing between trembling and akinesia, as well as other forms of movement cessation (e.g., stopping and sitting), against gold-standard video annotations. Experiments were conducted on a dataset of eighteen PD patients completing a FOG-provoking protocol in a gait laboratory. Results showed our model achieved an F1 score of 0.78 and segment F1@50 of 0.75 in detecting FOG manifestations. Assessment of FOG severity was strong for trembling (ICC=0.86, [0.66,0.95]) and moderately strong for akinesia (ICC=0.78, [0.51,0.91]). Importantly, our model successfully differentiated FOG from other forms of movement cessation during 360-degree turning-in-place tasks. In conclusion, our study demonstrates that DL can accurately assess different types of FOG manifestations, warranting further investigation in larger and more diverse verification cohorts.
Freezing of gait (FOG) is a common and severe symptom of Parkinson's disease (PD). Due to the complex underlying pathophysiology, FOG is difficult to assess, hampering further insight into this phenomenon. Inertial measurement units (IMUs) may enable FOG assessment during everyday life, but lack of standardization, e.g., the number and position of the IMUs, complicates an objective comparison of automatic FOG assessment algorithms. We propose a multi-stage temporal dilated convolutional model to automatically assess FOG based on IMU data. We collected simultaneous optical motion capture (MoCap) and IMU data of ten people with PD and FOG. We devised a simulation pipeline, i.e., generating IMU data from MoCap data, to objectively compare our approach to two state-of-The-Art FOG assessment models. The comparison was performed for five simulated IMU configurations, ranging from 1 to 7 IMUs. The results show that our approach outperforms the two state-of-The-Art methods on most of the simulated IMU configurations. The complete lower-body IMU setup of 7 IMUs (pelvis and both sides of the talus, tibia, and femur) enables the best FOG detection performance. Lastly, we show that our model trained by incorporating simulated IMU data enabled significantly improved FOG detection performance than our model trained only with real IMU data. In doing so, we demonstrate that retrospective MoCap datasets can be re-used to train expressive IMU-based FOG assessment models, reducing the required amount of dedicated and labor-intensive IMU data collection experiments.
Background: Freezing of gait (FOG) is a common and debilitating gait impairment in Parkinson’s disease. Further insight into this phenomenon is hampered by the difficulty to objectively assess FOG. To meet this clinical need, this paper proposes an automated motion-capture-based FOG assessment method driven by a novel deep neural network. Methods: Automated FOG assessment can be formulated as an action segmentation problem, where temporal models are tasked to recognize and temporally localize the FOG segments in untrimmed motion capture trials. This paper takes a closer look at the performance of state-of-the-art action segmentation models when tasked to automatically assess FOG. Furthermore, a novel deep neural network architecture is proposed that aims to better capture the spatial and temporal dependencies than the state-of-the-art baselines. The proposed network, termed multi-stage spatial-temporal graph convolutional network (MS-GCN), combines the spatial-temporal graph convolutional network (ST-GCN) and the multi-stage temporal convolutional network (MS-TCN). The ST-GCN captures the hierarchical spatial-temporal motion among the joints inherent to motion capture, while the multi-stage component reduces over-segmentation errors by refining the predictions over multiple stages. The proposed model was validated on a dataset of fourteen freezers, fourteen non-freezers, and fourteen healthy control subjects. Results: The experiments indicate that the proposed model outperforms four state-of-the-art baselines. Moreover, FOG outcomes derived from MS-GCN predictions had an excellent (r = 0.93 [0.87, 0.97]) and moderately strong (r = 0.75 [0.55, 0.87]) linear relationship with FOG outcomes derived from manual annotations. Conclusions: The proposed MS-GCN may provide an automated and objective alternative to labor-intensive clinician-based FOG assessment. Future work is now possible that aims to assess the generalization of MS-GCN to a larger and more varied verification cohort.
Although deep neural networks (DNNs) are showing state of the art performance in clinical gait analysis, they are considered to be black-box algorithms. In other words, there is a lack of direct understanding of a DNN’s ability to identify relevant features, hindering clinical acceptance. Interpretability methods have been developed to ameliorate this concern by providing a way to explain DNN predictions.
Methods
This paper proposes the use of an interpretability method to explain DNN decisions for classifying the movement that precedes freezing of gait (FOG), one of the most debilitating symptoms of Parkinson’s disease (PD). The proposed two-stage pipeline consists of (1) a convolutional neural network (CNN) to model the reduction of movement present before a FOG episode, and (2) layer-wise relevance propagation (LRP) to visualize the underlying features that the CNN perceives as important to model the pathology. The CNN was trained with the sagittal plane kinematics from a motion capture dataset of fourteen PD patients with FOG. The robustness of the model predictions and learned features was further assessed on fourteen PD patients without FOG and fourteen age-matched healthy controls.
Results
The CNN proved highly accurate in modelling the movement that precedes FOG, with 86.8% of the strides being correctly identified. However, the CNN model was unable to model the movement for one of the seven patients that froze during the protocol. The LRP interpretability case study shows that (1) the kinematic features perceived as most relevant by the CNN are the reduced peak knee flexion and the fixed ankle dorsiflexion during the swing phase, (2) very little relevance for FOG is observed in the PD patients without FOG and the healthy control subjects, and (3) the poor predictive performance of one subject is attributed to the patient’s unique and severely flexed gait signature.
Conclusions
The proposed pipeline can aid clinicians in explaining DNN decisions in clinical gait analysis and aid machine learning practitioners in assessing the generalization of their models by ensuring that the predictions are based on meaningful kinematic features. ...
Although deep neural networks (DNNs) are showing state of the art performance in clinical gait analysis, they are considered to be black-box algorithms. In other words, there is a lack of direct understanding of a DNN’s ability to identify relevant features, hindering clinical acceptance. Interpretability methods have been developed to ameliorate this concern by providing a way to explain DNN predictions.
Methods
This paper proposes the use of an interpretability method to explain DNN decisions for classifying the movement that precedes freezing of gait (FOG), one of the most debilitating symptoms of Parkinson’s disease (PD). The proposed two-stage pipeline consists of (1) a convolutional neural network (CNN) to model the reduction of movement present before a FOG episode, and (2) layer-wise relevance propagation (LRP) to visualize the underlying features that the CNN perceives as important to model the pathology. The CNN was trained with the sagittal plane kinematics from a motion capture dataset of fourteen PD patients with FOG. The robustness of the model predictions and learned features was further assessed on fourteen PD patients without FOG and fourteen age-matched healthy controls.
Results
The CNN proved highly accurate in modelling the movement that precedes FOG, with 86.8% of the strides being correctly identified. However, the CNN model was unable to model the movement for one of the seven patients that froze during the protocol. The LRP interpretability case study shows that (1) the kinematic features perceived as most relevant by the CNN are the reduced peak knee flexion and the fixed ankle dorsiflexion during the swing phase, (2) very little relevance for FOG is observed in the PD patients without FOG and the healthy control subjects, and (3) the poor predictive performance of one subject is attributed to the patient’s unique and severely flexed gait signature.
Conclusions
The proposed pipeline can aid clinicians in explaining DNN decisions in clinical gait analysis and aid machine learning practitioners in assessing the generalization of their models by ensuring that the predictions are based on meaningful kinematic features.
There are concerns about the stability of meropenem in plasma samples, even when frozen at −20 ◦ C. Previous smaller studies suggested significant degradation of meropenem at −20 ◦ C after 3–20 days. However, in several recent clinical studies, meropenem plasma samples were still stored at −20 ◦ C, or the storage temperature and/or time were not mentioned in the paper. The aim of this study was to describe and model meropenem degradation in human plasma at −20 ◦ C over 1 year. Stability of meropenem in human plasma at −20 ◦ C was investigated at seven concentrations (0.44, 4.38, 17.5, 35.1, 52.6, 70.1, and 87.6 mg/L) representative for the range of relevant concentrations encountered in clinical practice. For each concentration, samples were stored for 0, 7, 14, 21, 28, 42, 56, 70, 84, 112, 140, 168, 196, 224, 252, 280, 308, 336, and 364 days at −20 ◦ C before being transferred to −80 ◦ C until analysis. Degradation was modeled using polynomial regression analysis and artificial neural network (ANN). Meropenem showed significant degradation over time in human plasma when stored at −20 ◦ C. Degradation was present over the whole concentration range and increased with higher concentrations until a concentration of 35.1 mg/L. Both models showed accurate prediction of meropenem degradation. In conclusion, this study provides detailed insights into the concentration-dependent degradation of meropenem in human plasma stored at −20 ◦ C over 1 year. Meropenem in human plasma is shown to be stable at least up to approximately 80 days when stored at −20 ◦ C. The polynomial model allows calculating original meropenem concentrations in samples stored for a known period of time at −20 ◦ C.
Manual annotation of initial contact (IC) and end contact (EC) is a time consuming process. There are currently no robust techniques available to automate this process for Parkinson's disease (PD) patients with freezing of gait (FOG).
Objective
To determine the validity of a data-driven approach for automated gait event detection.
Methods
15 freezers were asked to complete several straight-line and 360 degree turning trials in a 3D gait laboratory during the off-period of their medication cycle. Trials that contained a freezing episode were indicated as freezing trials (FOG) and trials without a freezing episode were termed as functional gait (FG). Furthermore, the highly varied gait data between onset and termination of a FOG episode was excluded. A Temporal Convolutional Neural network (TCN) was trained end-to-end with lower extremity kinematics. A Bland-Altman analysis was performed to evaluate the agreement between the results of the proposed model and the manual annotations.
Results
For FOG-trials, F1 scores of 0.995 and 0.992 were obtained for IC and EC, respectively. For FG-trials, F1 scores of 0.997 and 0.999 were obtained for IC and EC, respectively. The Bland-Altman plots indicated excellent timing agreement, with on average 39% and 47% of the model predictions occurring within 10 ms from the manual annotations for FOG-trials and FG-trials, respectively.
Significance
These results indicate that our data-driven approach for detecting gait events in PD patients with FOG is sufficiently accurate and reliable for clinical applications. ...
Manual annotation of initial contact (IC) and end contact (EC) is a time consuming process. There are currently no robust techniques available to automate this process for Parkinson's disease (PD) patients with freezing of gait (FOG).
Objective
To determine the validity of a data-driven approach for automated gait event detection.
Methods
15 freezers were asked to complete several straight-line and 360 degree turning trials in a 3D gait laboratory during the off-period of their medication cycle. Trials that contained a freezing episode were indicated as freezing trials (FOG) and trials without a freezing episode were termed as functional gait (FG). Furthermore, the highly varied gait data between onset and termination of a FOG episode was excluded. A Temporal Convolutional Neural network (TCN) was trained end-to-end with lower extremity kinematics. A Bland-Altman analysis was performed to evaluate the agreement between the results of the proposed model and the manual annotations.
Results
For FOG-trials, F1 scores of 0.995 and 0.992 were obtained for IC and EC, respectively. For FG-trials, F1 scores of 0.997 and 0.999 were obtained for IC and EC, respectively. The Bland-Altman plots indicated excellent timing agreement, with on average 39% and 47% of the model predictions occurring within 10 ms from the manual annotations for FOG-trials and FG-trials, respectively.
Significance
These results indicate that our data-driven approach for detecting gait events in PD patients with FOG is sufficiently accurate and reliable for clinical applications.
The collaborative autonomous shipping experiment (Case)
Motivations, theory, infrastructure, and experimental challenges
The future autonomous ships will be operating in an environment where different autonomous and non-autonomous vessels with different characteristics exist. These vessels are owned by different parties and each uses its owned unique approaches for guidance and navigation. The Collaborative Autonomous Shipping Experiment (CASE) aims at emulating such an environment and also stimulating the move of automatic ship control algorithms towards practice by bringing together different institutes researching on autonomous vessels under an umbrella to experiment with collective sailing in inland waterways. In this paper, the experiments of CASE 2020 are explained, the characteristics of different participating vessels are discussed and some of the control and perception algorithms that are planned to be used at CASE 2020 are presented. CASE 2020 will be held in parallel to iSCSS 2020 at Delft University of Technology, the Netherlands.