A Comparative Multi-Frequency EPR Study of Dipolar Interaction in Tetra-Heme Cytochromes

A Comparative Multi-Frequency EPR Study of Dipolar Interaction in Tetra-Heme Cytochromes

Hagen, W.R. (TU Delft BT/Biocatalysis)
Louro, Ricardo O. (New University of Lisbon)

2023

Distances between Fe ions in multiheme cytochromes are sufficiently short to make the intramolecular dipole-dipole interaction between hemes probable. In the analysis of EPR data from cytochromes, this interaction has thus far been ignored under the assumption that spectra are the simple sum of non-interacting components. Here, we use a recently developed low-frequency broadband EPR spectrometer to establish the extent of dipolar interaction in the example cytochromes, characterize its spectral signatures, and identify present limitations in the analysis. Broadband EPR spectra of Shewanella oneidensis MR-1 small tetraheme cytochrome (STC) have been collected over the frequency range of 0.45 to 13.11 GHz, and they have been compared to similar data from Desulfovibrio vulgaris Hildenborough cytochrome c₃. The two cases are representative examples of two very different heme topologies and corresponding electron-transfer properties in tetraheme proteins. While in cytochrome c₃, the six Fe-Fe distances can be sorted into two well-separated groups, those in STC are diffuse. Since the onset of dipolar interaction between Fe-Fe pairs is already observed in the X-band, the g values are determined in the simulation of the 13.11 GHz spectrum. Low-frequency spectra are analyzed with the inclusion of dipolar interaction based on available structural data on mutual distances and orientations between all hemes. In this procedure, all 24 possible assignments of individual heme spectra to heme topologies are sampled. The 24 configurations can be reduced to a few, but inspection falls short of a unique assignment, due to a remaining lack of understanding of the fine details of these complex spectra. In general, the EPR analysis suggests the four-heme system in c₃ to be more rigid than that in STC, which is proposed to be related to different physiological roles in electron transfer.

broadband
cytochrome
Desulfovibrio
dipolar interaction
EPR
heme orientation
Shewanella
tetraheme

http://resolver.tudelft.nl/uuid:66ae94e5-5697-4f26-ad98-e6c76c7c5d99

https://doi.org/10.3390/ijms241612713

1661-6596

International Journal of Molecular Sciences (Online), 24 (16)

Institutional Repository

journal article

© 2023 W.R. Hagen, Ricardo O. Louro