Crossroad decisions in deep endometriosis treatment options: a qualitative study among patients

Objective: To study the experiences, considerations, and motivations of patients with endometriosis in the decision-making process for deep endometriosis (DE) treatment options. Design: Qualitative study using semi-structured in-depth focus group methodology. Setting: University medical center. Patient(s): A total of 19 Dutch women diagnosed...

Naming Amplified Tests Based on Improved Coverage

Test amplification generates new test cases that improve the coverage of an existing test suite. To convince developers to integrate these new test cases into their test suite, it is crucial to convey the behavior and the improvement in coverage that the amplified test case provides. In this paper, we present NATIC, an approach to generate names...

Optimal endobronchial tool sizes for targeting lung lesions based on 3D modeling

Background For patients with suspicious lung lesions found on chest x-ray or CT, endo/trans- bronchial biopsy of the lung is the preferred method for obtaining a diagnosis. With the addition of new screening programs, a higher number of patients will require diagnostic biopsy which will prove even more challenging due to the small size of...

Chromosomal Copy Number Variation in Saccharomyces pastorianus Is Evidence for Extensive Genome Dynamics in Industrial Lager Brewing Strains

Lager brewing strains of Saccharomyces pastorianus are natural interspecific hybrids originating from the spontaneous hybridization of Saccharomyces cerevisiae and Saccharomyces eubayanus. Over the past 500 years, S. pastorianus has been domesticated to become one of the most important industrial microorganisms. Production of lager-type beers...

Algorithms for sequence-based reverse metabolic engineering

Microorganisms are employed on a large scale in a variety of industrial production processes, such as production of food and ingredients, beverages, pharmaceutical compo- nents and fine- and bulk chemicals. Improving the behaviour of these microorganisms is of crucial importance in the design of efficient production processes. In this thesis we...

Genome duplication and mutations in ACE2 cause multicellular, fast-sedimenting phenotypes in evolved Saccharomyces cerevisiae

Laboratory evolution of the yeast Saccharomyces cerevisiae in bioreactor batch cultures yielded variants that grow as multicellular, fast-sedimenting clusters. Knowledge of the molecular basis of this phenomenon may contribute to the understanding of natural evolution of multicellularity and to manipulating cell sedimentation in laboratory and...

GRASS: A generic algorithm for scaffolding next-generation sequencing assemblies

Motivation: The increasing availability of second-generation highthroughput sequencing (HTS) technologies has sparked a growing interest in de novo genome sequencing. This in turn has fueled the need for reliable means of obtaining high-quality draft genomes from short-read sequencing data. The millions of reads usually involved in HTS...

De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology

Saccharomyces cerevisiae CEN.PK 113-7D is widely used for metabolic engineering and systems biology research in industry and academia. We sequenced, assembled, annotated and analyzed its genome. Single-nucleotide variations (SNV), insertions/deletions (indels) and differences in genome organization compared to the reference strain S. cerevisiae...

Knowledge virtualization and local connectedness among smart high-tech companies

Smart high-tech companies are characterized by knowledge intensity and open innovation. Even when these companies emerge in spatial clusters or dense urban places, they may utilize knowledge networks on a global scale. However, there is not much insight into the factors that shape knowledge networks, the role of virtualization herein and the...

Integrating genome assemblies with MAIA

De novo assembly of a eukaryotic genome with next-generation sequencing data is still a challenging task. Over the past few years several assemblers have been developed, often suitable for one specific type of sequencing data. The number of known genomes is expanding rapidly, therefore it becomes possible to use multiple reference genomes for...

Place-bound versus footloose firms: Wiring metropolitan areas in a policy context

In the development of modern urban systems, we are facing a shift from central cities as the major location of coordination functions, high-order services and innovative activities, to interconnected nodes at some distance in a larger metropolitan area. However, which cities in the emerging new spatial constellation qualify to become such a node...

Randstad centraal

Architecture, Building and Planning

Report by the Review Committee for the Assessment of Research in Architecture, Building and Planning.

Slow motion; een andere kijk op snelheid

Beheersing van automobiliteit: Feit of fictie?

Infrastructuur, transport & logistiek: Profilering van universitair onderzoek