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Park, Seongyeon (author), Kim, Hajin (author), Ahmad, T. (author), Ahmed, N. (author), Al-Ars, Z. (author), Hofstee, H.P. (author), Kim, Youngsok (author), Lee, Jinho (author)Sequence alignment forms an important backbone in many sequencing applications. A commonly used strategy for sequence alignment is an approximate string matching with a two-dimensional dynamic programming approach. Although some prior work has been conducted on GPU acceleration of a sequence alignment, we identify several shortcomings that limit...conference paper 2022
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Kim, E. (author), Martin Gonzalez, A. (author), Pradhan, B. (author), van der Torre, J. (author), Dekker, C. (author)Condensin, a structural maintenance of chromosomes (SMC) complex, has been shown to be a molecular motor protein that organizes chromosomes by extruding loops of DNA. In cells, such loop extrusion is challenged by many potential conflicts, for example, the torsional stresses that are generated by other DNA-processing enzymes. It has so far...journal article 2022
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Ferreira, Joao Dinis (author), Falcao, Gabriel (author), Gomez-Luna, Juan (author), Alser, Mohammed (author), Orosa, Lois (author), Sadrosadati, Mohammad (author), Kim, Jeremie S. (author), Oliveira, Geraldo F. (author), Shahroodi, Taha (author)Data movement between the main memory and the processor is a key contributor to execution time and energy consumption in memory-intensive applications. This data movement bottleneck can be alleviated using Processing-in-Memory (PiM). One category of PiM is Processing-using-Memory (PuM), in which computation takes place inside the memory array...conference paper 2022
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Aliyu, Ibrahim (author), van Engelenburg, S.H. (author), Mu'azu, Muhammed Bashir (author), Kim, Jinsul (author), Lim, Chang Gyoon (author)The internet-of-Vehicle (IoV) can facilitate seamless connectivity between connected vehicles (CV), autonomous vehicles (AV), and other IoV entities. Intrusion Detection Systems (IDSs) for IoV networks can rely on machine learning (ML) to protect the in-vehicle network from cyber-attacks. Blockchain-based Federated Forests (BFFs) could be...journal article 2022
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Lekkala, Malakonda Reddy (author), Latheef, Mohamed (author), Jung, Jae Hwan (author), Coraddu, A. (author), Zhu, Hongjun (author), Srinil, Narakorn (author), Lee, Byung Hyuk (author), Kim, Do Kyun (author)The application of unsteady incompressible flow phenomenon over the bluff bodies has received the attention of many researchers due to the rich and complex physics underpinning these flows, and thus requiring special attention in their modelling and numerical simulations. The wake that forms at the leeside of the bluff body is of particular...review 2022
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Mulla, Yuval (author), Avellaneda, Mario J. (author), Roland, A.P.J. (author), Baldauf, L. (author), Jung, Wonyeong (author), Kim, Taeyoon (author), Tans, S.J. (author), Koenderink, G.H. (author)Molecular catch bonds are ubiquitous in biology and essential for processes like leucocyte extravasion<sup>1</sup> and cellular mechanosensing<sup>2</sup>. Unlike normal (slip) bonds, catch bonds strengthen under tension. The current paradigm is that this feature provides ‘strength on demand<sup>3</sup>’, thus enabling cells to increase...journal article 2022
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Kim, Kwantae (author), Gao, C. (author), Graca, Rui (author), Kiselev, Ilya (author), Yoo, Hoi Jun (author), Delbruck, Tobi (author), Liu, Shih Chii (author)This article presents the first keyword spotting (KWS) IC that uses a ring-oscillator-based time-domain processing technique for its analog feature extractor (FEx). Its extensive usage of time-encoding schemes allows the analog audio signal to be processed in a fully time-domain manner except for the voltage-to-time conversion stage of the...journal article 2022
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Kim, Daehyun D. (author), Han, Heejoo (author), Yun, Taeho (author), Song, Min Joon (author), Terada, Akihiko (author), Laureni, M. (author), Yoon, Sukhwan (author)Microorganisms possessing N<sub>2</sub>O reductases (NosZ) are the only known environmental sink of N<sub>2</sub>O. While oxygen inhibition of NosZ activity is widely known, environments where N<sub>2</sub>O reduction occurs are often not devoid of O<sub>2</sub>. However, little is known regarding N<sub>2</sub>O reduction in microoxic systems...journal article 2022
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Kim, Munyung (author), Borst, C. (author), Mulder, Max (author)To meet increasing safety and performance demands in air traffic control (ATC), more advanced automated systems will be introduced to assist human air traffic controllers. Some even foresee complete automation, with the human as a supervisor only to step-in when automation fails. Literature and empirical evidence suggest that supervising...journal article 2022
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Yun, Yoojoo (author), Shin, D. (author), Kim, Hakseong (author), Choi, Jun Hee (author), Jeong, Hyunjeong (author), Suh, Dongseok (author), Kang, Haeyong (author), Lee, S. (author)The electrical properties of a single facet of an individual ZnO microwire were investigated. Electrode patterns with a Hall bar structure were deposited on the surface of the top facet of the ZnO microwire. Using a suspended and cross-linked poly(methyl methacrylate) ribbon structure, it was possible to define the electrical connections only...journal article 2022
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Pradhan, B. (author), Barth, R. (author), Kim, E. (author), van Laar, T. (author), Yang, W.W.W. (author), Ryu, J.K. (author), van der Torre, J. (author), Peters, Jan Michael (author), Dekker, C. (author)Ring-shaped structural maintenance of chromosomes (SMC) complexes like condensin and cohesin extrude loops of DNA. It remains, however, unclear how they can extrude DNA loops in chromatin that is bound with proteins. Here, we use in vitro single-molecule visualization to show that nucleosomes, RNA polymerase, and dCas9 pose virtually no...journal article 2022
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Kim, Jinhyun (author), Um, Yunna (author), Han, Seunghyun (author), Hilberath, T. (author), Kim, Yong Hwan (author), Hollmann, F. (author), Park, Chan Beum (author)The pulp and paper manufacturers generate approximately 50 million metric tons of lignin per annum, most of which has been abandoned or incinerated because of lignin's recalcitrant nature. Here, we report bias-free photoelectrochemical (PEC) oxidation of lignin coupled with asymmetric hydrogenation of C=C bonds. The PEC platform consists of a...journal article 2022
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Lee, Jaejin (author), Kim, S.H. (author), Se, Tola (author), Kim, Doseok (author)Single-molecule fluorescence experiments allow monitoring of the structural change and dynamics of a single biomolecule in real time using dye molecules attached to the molecule. Often, the molecules are immobilized on the surface to observe a longer molecular dynamics, yet the finite photon budget available from an individual dye molecule...journal article 2022
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Ashourvan, Arian (author), Gonçalves Melo Pequito, S.D. (author), Bertolero, Maxwell (author), Kim, Jason Z. (author), Bassett, Danielle S. (author), Litt, Brian (author)A fundamental challenge in neuroscience is to uncover the principles governing how the brain interacts with the external environment. However, assumptions about external stimuli fundamentally constrain current computational models. We show in silico that unknown external stimulation can produce error in the estimated linear time-invariant...journal article 2022
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Simoes dos Santos, D. (author), Fool, F. (author), Kim, Taehoon (author), Noothout, E.C. (author), Rozsa, N.N.M. (author), Vos, H.J. (author), Bosch, Johan G. (author), Pertijs, M.A.P. (author), Verweij, M.D. (author), De Jona, Nico (author)Over the past decades, ultrasound imaging has made considerable progress based on the advancement of imaging systems as well as transducer technology. With the need for advanced transducer arrays with complex designs and technical requirements, there is also a need for suitable tools to characterize such transducers. However, despite the...conference paper 2022
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Kapteijn, S. (author), Kim, Wansoo (author), Marchal Crespo, L. (author), Peternel, L. (author)Walking is an essential part of almost all activities of daily living. We use different gait patterns in different situations, e.g., moving around the house, performing various sports, or when compensating for an injury. However, how humans perform this gait tailoring remains a partially unknown process. To this end, the influence of various...conference paper 2022
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Lee, Sujin (author), Lee, Jinwoo (author), Hiemstra-van Mastrigt, S. (author), Kim, E.Y. (author)As city-level modal splits are outcomes of city functions, it is essential to understand whether and how city attributes affect modal splits to derive a modal shift toward low-emission travel modes and sustainable mobility in cities. This study elucidates this relationship between modal splits and city attributes in 46 cities worldwide,...journal article 2022
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Simoes dos Santos, D. (author), Fool, F. (author), Mozaffarzadeh, M. (author), Shabanimotlagh, M. (author), Noothout, E.C. (author), Kim, T. (author), Rozsa, N.N.M. (author), Vos, H.J. (author), Bosch, Johan G. (author), Pertijs, M.A.P. (author), Verweij, M.D. (author), de Jong, N. (author)High frame rate three-dimensional (3D) ultrasound imaging would offer excellent possibilities for the accurate assessment of carotid artery diseases. This calls for a matrix transducer with a large aperture and a vast number of elements. Such a matrix transducer should be interfaced with an application-specific integrated circuit (ASIC) for...journal article 2022
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Kim, Tess (author)The Airport Coordination Netherlands monitors the conformity of airlines to the allocated slots in cooperation with the relevant authorities. ACNL discovered the non-conformity behaviour of slot usage in Schiphol Airport of the Netherlands, and among nine types of misuses, this paper will discuss the one type of misuses: a flight operated at a...master thesis 2021
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Kim, I.-C. (author), Kaihatu, J.M. (author)As surface waves propagate from deep water toward shallow coastal areas, their ensuing transformation is due to the influence of bathymetry and several important phenomena, such as refraction, shoaling ,and nonlinear effects. Nonlinear wave models based on the classical Boussinesq equation(Peregrine, 1967)have evidenced good performance in...conference paper 2021