Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations

Background: Assembly algorithm choice should be a deliberate, well-justified decision when researchers create genome assemblies for eukaryotic organisms from third-generation sequencing technologies. While third-generation sequencing by Oxford Nanopore Technologies (ONT) and Pacific Biosciences (PacBio) has overcome the disadvantages of short...

Integrated 64 pixel UV image sensor and readout in a silicon carbide CMOS technology

This work demonstrates the first on-chip UV optoelectronic integration in 4H-SiC CMOS, which includes an image sensor with 64 active pixels and a total of 1263 transistors on a 100 mm2 chip. The reported image sensor offers serial digital, analog, and 2-bit ADC outputs and operates at 0.39 Hz with a maximum power consumption of 60 μW, which are...

Medellin Air Quality Initiative (MAUI)

This chapter book presents Medellín Air qUality Initiative or MAUI Project; it tells a brief story of this teamwork, their scientific and technological directions. The modeling work focuses on the ecosystems and human health impact due to the exposition of several pollutants transported from long-range places and deposited. For this objective,...

Simultaneous orientation and 3D localization microscopy with a Vortex point spread function

Estimating the orientation and 3D position of rotationally constrained emitters with localization microscopy typically requires polarization splitting or a large engineered Point Spread Function (PSF). Here we utilize a compact modified PSF for single molecule emitter imaging to estimate simultaneously the 3D position, dipole orientation, and...

Linear programs for entanglement and key distribution in the quantum internet

Quantum networks will allow to implement communication tasks beyond the reach of their classical counterparts. A pressing and necessary issue for the design of quantum network protocols is the quantification of the rates at which these tasks can be performed. Here, we propose a simple recipe that yields efficiently computable lower and upper...

Reactive ion etching for fabrication of biofunctional titanium nanostructures

One of the major problems with the bone implant surfaces after surgery is the competition of host and bacterial cells to adhere to the implant surfaces. To keep the implants safe against implant-associated infections, the implant surface may be decorated with bactericidal nanostructures. Therefore, fabrication of nanostructures on...

A general method for the creation of dilational surfaces

Dilational structures can change in size without changing their shape. Current dilational designs are only suitable for specific shapes or curvatures and often require parts of the structure to move perpendicular to the dilational surface, thereby occupying part of the enclosed volume. Here, we present a general method for creating dilational...

Angular momentum properties of hybrid cylindrical vector vortex beams in tightly focused optical systems

Optical angular momenta (AM) have attracted tremendous research interest in recent years. In this paper we theoretically investigate the electromagnetic field and angular momentum properties of tightly focused arbitrary cylindrical vortex vector (CVV) input beams. An absorptive particle is placed in focused CVV fields to analyze the optical...

Global phosphorus recovery from wastewater for agricultural reuse

Phosphorus is a nutrient necessary for the development of crops and is thus commonly applied as fertilizer to sustain agricultural production. It occurs naturally, in indefinite quantities of uncertain quality in phosphate rock formations, but also accumulates in urban and livestock wastewater wherefrom it is often lost as a pollutant....

Experimental estimation of energy absorption during heel strike in human barefoot walking

Metabolic energy expenditure during human gait is poorly understood. Mechanical energy loss during heel strike contributes to this energy expenditure. Previous work has estimated the energy absorption during heel strike as 0.8 J using an effective foot mass model. The aim of our study is to investigate the possibility of determining the energy...

Accessing individual 75-micron diameter nozzles of a desktop inkjet printer to dispense picoliter droplets on demand

Desktop inkjet printers are ubiquitous and relatively inexpensive among the variety of available printers. These inkjet printers use an array of micro fluidic pumps, nozzles based on piezoelectric actuation, to dispense individual picoliter volume ink droplets at high speed. In this paper, we show that individual pumps in desktop printers can be...

A doping-less junction-formation mechanism between n-silicon and an atomically thin boron layer

The interest in nanostructures of silicon and its dopants has significantly increased. We report the creation of an ultimately-shallow junction at the surface of n-type silicon with excellent electrical and optical characteristics made by depositing an atomically thin boron layer at a relatively low temperature where no doping of silicon is...

Improved GRACE regional mass balance estimates of the Greenland ice sheet cross-validated with the input–output method

In this study, we use satellite gravimetry data from the Gravity Recovery and Climate Experiment (GRACE) to estimate regional mass change of the Greenland ice sheet (GrIS) and neighboring glaciated regions using a least squares inversion approach. We also consider results from the input–output method (IOM). The IOM quantifies the difference...

Time-Varying Scheme for Non-Centralized Model Predictive Control of Large-scale Systems

The Non-Centralized Model Predictive Control (NC-MPC) framework refers in this paper to any distributed, hierarchical, or decentralized model predictive controller (or a combination of them) the structure of which can change over time and the control actions of which are not obtained based on a centralized computation. Within this framework, we...

Normalizing alternate representations of large sequence variants across multiple bacterial genomes

Evaluating MERIS-Based Aquatic Vegetation Mapping in Lake Victoria

Delineation of aquatic plants and estimation of its surface extent are crucial to the efficient control of its proliferation, and this information can be derived accurately with fine resolution remote sensing products. However, small swath and low observation frequency associated with them may be prohibitive for application to large water bodies...