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Piccoli, Francesco (author)
Recent advancements in machine learning (ML) have shown promise in accelerating polymer discovery by aiding in tasks such as virtual screening via property prediction, and the design of new polymer materials with desired chemical properties. However, progress in polymer ML is hampered by the scarcity of high-quality, labelled datasets, which are...
master thesis 2024
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Havelka, Matej (author)
The field of causal inference provides a variety of estimators that can be used to find the effect of a treatment on an outcome based on observational data. However, many of these estimators require the unconfoundedness assumption, stating that all relevant confounders are observed within the data. This assumption is quite strict and many real...
master thesis 2024
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Bhuradia, Mehul (author)
Proteins are fundamental biological macromolecules essential for cellular structure, enzymatic catalysis, and immune defense, making the generation of novel proteins crucial for advancements in medicine, biotechnology, and material sciences. This study explores protein design using deep generative models, specifically Denoising Diffusion...
master thesis 2024
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Collé, Baptiste (author)
The emergence of Language Language Models (LLMs)-based agents represents a significant advancement in artificial intelligence (AI), offering new possibilities for complex problem-solving and interaction within a virtual environment. Our work is based on the Voyager paper [1], which is a state-of-the-art LLM-based agent for Minecraft. However,...
master thesis 2024
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Volkers, Bas (author)
Individualizing mechanical ventilation treatment regimes remains a challenge in the intensive care unit (ICU). Reinforcement Learning (RL) offers the potential to improve patient outcomes and reduce mortality risk, by optimizing ventilation treatment regimes. We focus on the Offline RL setting, using Offline Policy Evaluation (OPE), specifically...
master thesis 2024
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Taklimi, Sam (author)
The objective of this project is to train a model that transforms a tree with its foliage into only its branch structure. This is achieved by employing machine-learning techniques, specifically Generative Adverserial Networks (GANs). By utilizing the proposed method, a predictive model is built that automatically minimizes its own error function...
bachelor thesis 2024
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Manda, Sebastian (author)
Trees are essential components of both real and digital environments. Therefore, it is important to have 3D models of trees that are of high quality and computationally efficient. One way to achieve this is by compressing a high-quality model using billboard rendering, which involves partitioning the tree into multiple planes to produce a...
bachelor thesis 2024
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Sahay, Shashwat (author)
L-Systems allow for the efficient procedeural generation of trees to be used for rendering in video games and simulations. Currently, however, it is difficult to engineer grammars that mimic the behaviours of real life trees in 3 dimensions. To be able to deduce them, the skeleton of a tree can be used to train a model and generate an L-system...
bachelor thesis 2024
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van Wijngaarden, Matthijs (author)
Large chemical reaction databases often suffer from incompleteness, such as missing molecules or stoichiometric information. Concurrently, numerous computational models are being developed in predictive chemistry that rely on reaction databases and would hugely benefit from complete reaction equations. Also, research in sustainable chemistry...
master thesis 2023
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Poulakakis Daktylidis, Stelios (author)
There exists a fundamental gap between human and artificial intelligence. Deep learning models are exceedingly data hungry for learning even the simplest of tasks, whereas humans can easily adapt to new tasks with just a handful of samples. Unsupervised few-shot learning (U-FSL) aspires to bridge this gap, without relying on costly annotations....
master thesis 2023
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Ries, Maxmillan (author)
Training deep learning models for time-series prediction of a target population often requires a substantial amount of training data, which may not be readily available. This work addresses the challenge of leveraging multiple related sources of time series data in the same feature space to improve the prediction performance of a deep learning...
master thesis 2023
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Cristea, Vlad (author)
Federated Learning is a machine learning paradigm for decentralized training over different clients. The training happens in rounds where each client learns a specific model which is then aggregated by a central server and passed back to the clients. Since the paradigm’s inception, many frameworks that provide Federated Learning tools and...
bachelor thesis 2023
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Sīpols, Emīls (author)
Federated learning (FL) has emerged as a promis-ing approach for training machine learning models using geographically distributed data. This paper presents a comprehensive comparative study of var-ious machine learning models in the context of FL. The aim is to evaluate the efficacy of these models in different data distribution scenarios and...
bachelor thesis 2023
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Grzejdziak, Michał (author)
Neural networks are commonly initialized to keep the theoretical variance of the hidden pre-activations constant, in order to avoid the vanishing and exploding gradient problem. Though this condition is necessary to train very deep networks, numerous analyses showed that it is not sufficient. We explain this fact by analyzing the behavior of the...
master thesis 2023
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ter Horst, Ynze (author)
master thesis 2023
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Hendriks, Manon (author)
Maasstad Hospital is a member of the Santeon hospital group. The ambition of Santeon is to improve healthcare for patients. The project in this internship also aims to improve patients’ health, specifically patients in the Intensive Care Unit (ICU).<br/>The treatment of respiratory insufficient patients in the ICU consists of High Flow Nasal...
master thesis 2023
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de Boer, Jurrian (author)
Recent advancements in quantification of repair outcomes of CRISPR-Cas9 mediated double-stranded DNA breaks (DSBs) have allowed for the use of machine learning for predicting the frequencies of these repair outcomes. Local DNA sequence context influences the frequencies of mutations that arise when DNA gets repaired after it is targeted by...
master thesis 2022
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van der Wal, Robin (author)
Multiple Instance Learning (MIL) is a type of semi-supervised machine learning used recently in medical and multi-media fields. In MIL, instead of a single feature vector, a set of feature vectors has to be classified. Standard MIL algorithms assume that only some of these vectors are useful for building a classifier. This paper extends the...
master thesis 2022
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Goossens, Sander (author)
Motivation: Many tumors show deficiencies in DNA damage repair. These deficiencies can play a role in the disease, but also expose vulnerabilities with therapeutic potential. Targeted treatments exploit specific repair deficiencies, for instance based on synthetic lethality. To decide which patients could benefit from such therapies requires the...
master thesis 2022
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Freyer, Caroline (author)
Outlier detection in time series has important applications in a wide variety of fields, such as patient health, weather forecasting, and cyber security. Unfortunately, outlier detection in time series data poses many challenges, making it difficult to establish an accurate and efficient detection method. In this thesis, we propose the Random...
master thesis 2022
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