Omer Burak Demirel
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8 records found
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Purpose: To develop a physics-guided deep learning (PG-DL) reconstruction strategy based on a signal intensity informed multi-coil (SIIM) encoding operator for highly-accelerated simultaneous multislice (SMS) myocardial perfusion cardiac MRI (CMR). Methods: First-pass perfusion CMR acquires highly-accelerated images with dynamically varying signal intensity/SNR following the administration of a gadolinium-based contrast agent. Thus, using PG-DL reconstruction with a conventional multi-coil encoding operator leads to analogous signal intensity variations across different time-frames at the network output, creating difficulties in generalization for varying SNR levels. We propose to use a SIIM encoding operator to capture the signal intensity/SNR variations across time-frames in a reformulated encoding operator. This leads to a more uniform/flat contrast at the output of the PG-DL network, facilitating generalizability across time-frames. PG-DL reconstruction with the proposed SIIM encoding operator is compared to PG-DL with conventional encoding operator, split slice-GRAPPA, locally low-rank (LLR) regularized reconstruction, low-rank plus sparse (L + S) reconstruction, and regularized ROCK-SPIRiT. Results: Results on highly accelerated free-breathing first pass myocardial perfusion CMR at three-fold SMS and four-fold in-plane acceleration show that the proposed method improves upon the reconstruction methods use for comparison. Substantial noise reduction is achieved compared to split slice-GRAPPA, and aliasing artifacts reduction compared to LLR regularized reconstruction, L + S reconstruction and PG-DL with conventional encoding. Furthermore, a qualitative reader study indicated that proposed method outperformed all methods. Conclusion: PG-DL reconstruction with the proposed SIIM encoding operator improves generalization across different time-frames /SNRs in highly accelerated perfusion CMR.
Dynamic contrast enhanced (DCE) MRI acquires a series of images following the administration of a contrast agent, and plays an important clinical role in diagnosing various diseases. DCE MRI typically necessitates rapid imaging to provide sufficient spatio-temporal resolution and coverage. Conventional MRI acceleration techniques exhibit limited image quality at such high acceleration rates. Recently, deep learning (DL) methods have gained interest for improving highly-accelerated MRI. However, DCE MRI series show substantial variations in SNR and contrast across images. This hinders the quality and generalizability of DL methods, when applied across time frames. In this study, we propose signal intensity informed multi-coil MRI encoding operator for improved DL reconstruction of DCE MRI. The output of the corresponding inverse problem for this forward operator leads to more uniform contrast across time frames, since the proposed operator captures signal intensity variations across time frames while not altering the coil sensitivities. Our results in perfusion cardiac MRI show that high-quality images are reconstructed at very high acceleration rates, with substantial improvement over existing methods.
Ischemic heart disease (IHD) is one of the leading causes of death worldwide. Myocardial infarction (MI) represents a third of all IHD cases, and cardiac magnetic resonance imaging (MRI) is often used to assess its damage to myocardial viability. Late gadolinium enhancement (LGE) is the current gold standard, but the use of gadolinium-based agents limits the clinical applicability in some patients. Spin-lock (SL) dispersion has recently been proposed as a promising non-contrast biomarker for the assessment of MI. However, at 3T, the required range of SL preparations acquired at different amplitudes suffers from specific absorption rate (SAR) limitations and off-resonance artifacts. Relaxation Along a Fictitious Field (RAFF) is an alternative to SL preparations with lower SAR requirements, while still sampling relaxation in the rotating frame. In this study, a single breath-hold simultaneous TRAFF2 and T2 mapping sequence is proposed for SL dispersion mapping at 3T. Excellent reproducibility (coefficient of variations lower than 10%) was achieved in phantom experiments, indicating good intrascan repeatability. The average myocardial TRAFF2, T2, and SL dispersion obtained with the proposed sequence (68.0±10.7 ms, 44.0±4.0 ms, and 0.4±0.2 ×10-4 s2, respectively) were comparable to the reference methods (62.7±11.7 ms, 41.2±2.4 ms, and 0.3±0.2x 10-4s2, respectively). High visual map quality, free of B0 and B1+ related artifacts, for T2, TRAFF2, and SL dispersion maps were obtained in phantoms and in vivo, suggesting promise in clinical use at 3T. Clinical relevance - and imaging promises non-contrast assessment of scar and focal fibrosis in a single breath-hold using approximate spin-lock dispersion mapping.
Purpose: To develop and evaluate a simultaneous multislice (SMS) reconstruction technique that provides noise reduction and leakage blocking for highly accelerated cardiac MRI. Methods: ReadOut Concatenated k-space SPIRiT (ROCK-SPIRiT) uses the concept of readout concatenation in image domain to represent SMS encoding, and performs coil self-consistency as in SPIRiT-type reconstruction in an extended k-space, while allowing regularization for further denoising. The proposed method is implemented with and without regularization, and validated on retrospectively SMS-accelerated cine imaging with three-fold SMS and two-fold in-plane acceleration. ROCK-SPIRiT is compared with two leakage-blocking SMS reconstruction methods: readout-SENSE-GRAPPA and split slice–GRAPPA. Further evaluation and comparisons are performed using prospectively SMS-accelerated cine imaging. Results: Results on retrospectively three-fold SMS and two-fold in-plane accelerated cine imaging show that ROCK-SPIRiT without regularization significantly improves on existing methods in terms of PSNR (readout-SENSE-GRAPPA: 33.5 ± 3.2, split slice–GRAPPA: 34.1 ± 3.8, ROCK-SPIRiT: 35.0 ± 3.3) and SSIM (readout-SENSE-GRAPPA: 84.4 ± 8.9, split slice–GRAPPA: 85.0 ± 8.9, ROCK-SPIRiT: 88.2 ± 6.6 [in percentage]). Regularized ROCK-SPIRiT significantly outperforms all methods, as characterized by these quantitative metrics (PSNR: 37.6 ± 3.8, SSIM: 94.2 ± 4.1 [in percentage]). The prospectively five-fold SMS and two-fold in-plane accelerated data show that ROCK-SPIRiT and regularized ROCK-SPIRiT have visually improved image quality compared with existing methods. Conclusion: The proposed ROCK-SPIRiT technique reduces noise and interslice leakage in accelerated SMS cardiac cine MRI, improving on existing methods both quantitatively and qualitatively.
Purpose: To implement a free-breathing sequence for simultaneous quantification of (Formula presented.), (Formula presented.), and (Formula presented.) for comprehensive tissue characterization of the myocardium in a single scan using a multi-gradient-echo readout with saturation and (Formula presented.) preparation pulses. Methods: In the proposed Saturation And (Formula presented.) -prepared Relaxometry with Navigator-gating (SATURN) technique, a series of multi-gradient-echo (GRE) images with different magnetization preparations was acquired during free breathing. A total of 35 images were acquired in 26.5 ± 14.9 seconds using multiple saturation times and (Formula presented.) preparation durations and with imaging at 5 echo times. Bloch simulations and phantom experiments were used to validate a 5-parameter fit model for accurate relaxometry. Free-breathing simultaneous (Formula presented.), (Formula presented.), and (Formula presented.) measurements were performed in 10 healthy volunteers and 2 patients using SATURN at 3T and quantitatively compared to conventional single-parameter methods such as SASHA for (Formula presented.), (Formula presented.) -prepared bSSFP, and multi-GRE for (Formula presented.). Results: Simulations confirmed accurate fitting with the 5-parameter model. Phantom measurements showed good agreement with the reference methods in the relevant range for in vivo measurements. Compared to single-parameter methods comparable accuracy was achieved. SATURN produced in vivo parameter maps that were visually comparable to single-parameter methods. No significant difference between (Formula presented.), (Formula presented.), and (Formula presented.) times acquired with SATURN and single-parameter methods was shown in quantitative measurements (SATURN (Formula presented.), (Formula presented.), (Formula presented.); conventional methods: (Formula presented.), (Formula presented.), (Formula presented.); (Formula presented.)). Conclusion: SATURN enables simultaneous quantification of (Formula presented.), (Formula presented.), and (Formula presented.) in the myocardium for comprehensive tissue characterization with co-registered maps, in a single scan with good agreement to single-parameter methods.
Perfusion cardiac MRI (CMR) is a radiation-free and noninvasive imaging tool which has gained increasing interest for the diagnosis of coronary artery disease. However, resolution and coverage are limited in perfusion CMR due to the necessity of single snap-shot imaging during the first-pass of a contrast agent. Simultaneous multi-slice (SMS) imaging has the potential for high acceleration rates with minimal signal-to-noise ratio (SNR) loss. However, its utility in CMR has been limited to moderate acceleration factors due to residual leakage artifacts from the extra-cardiac tissue such as the chest and the back. Outer volume suppression (OVS) with leakage-blocking reconstruction has been used to enable higher acceleration rates in perfusion CMR, but suffers from higher noise amplification. In this study, we sought to augment OVS-SMS/MB imaging with a regularized leakage-blocking reconstruction algorithm to improve image quality. Results from highly-accelerated perfusion CMR show that the method improves upon SMS-SPIRiT in terms of leakage reduction and split slice (ss)-GRAPPA in terms of noise mitigation.