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S. Khodadadi

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3 records found

Journal article (2018) - Hirsh Nanda, Victoria García Sakai, Sheila Khodadadi, Madhu Sudan Tyagi, Edwin J. Schwalbach, Joseph E. Curtis
We present experimental measurements and analysis of the dynamics and the phase behaviour of saturated DMPC and unsaturated DOPC oriented multi-lamellar bilayers. Elastic and inelastic neutron scattering were used to directly probe the dynamical processes of these membrane systems on time and length scales relevant to the internal and localized motion of lipid monomers. Mobility in this regime can be informative in elucidating the local interactions responsible for material properties of these fluid lipid systems. DMPC and DOPC are structurally similar in terms of their membrane hydrophobic thickness; however, they exhibit different mechanical properties in terms of both elastic compressibility and bending moduli. The analyses suggest that the constraint imposed by the double bonds in DOPC acyl chains restricts atomic motion in both liquid and gel phases compared to DMPC. We discuss applications of molecular dynamics to further elucidate the atomic details of the dynamical processes. Such an understanding may suggest how membrane properties can be tuned using a variety of different lipid species. ...
Journal article (2017) - Sheila Khodadadi, Alexei P. Sokolov
Background The importance of protein dynamics for their biological activity is now well recognized. Different experimental and computational techniques have been employed to study protein dynamics, hierarchy of different processes and the coupling between protein and hydration water dynamics. Yet, understanding the atomistic details of protein dynamics and the role of hydration water remains rather limited. Scoop of review Based on overview of neutron scattering, molecular dynamic simulations, NMR and dielectric spectroscopy results we present a general picture of protein dynamics covering time scales from faster than ps to microseconds and the influence of hydration water on different relaxation processes. Major conclusions Internal protein dynamics spread over a wide time range from faster than picosecond to longer than microseconds. We suggest that the structural relaxation in hydrated proteins appears on the microsecond time scale, while faster processes present mostly motion of side groups and some domains. Hydration water plays a crucial role in protein dynamics on all time scales. It controls the coupled protein-hydration water relaxation on 10–100 ps time scale. This process defines the friction for slower protein dynamics. Analysis suggests that changes in amount of hydration water affect not only general friction, but also influence significantly the protein's energy landscape. General significance The proposed atomistic picture of protein dynamics provides deeper understanding of various relaxation processes and their hierarchy, similarity and differences between various biological macromolecules, including proteins, DNA and RNA. This article is part of a Special Issue entitled “Science for Life” Guest Editor: Dr. Austen Angell, Dr. Salvatore Magazù and Dr. Federica Migliardo”. ...
Journal article (2016) - S. Khodadadi, G. M H Meesters, G. Biskos
Thin films produced by electrostatic spray deposition (ESD) have nanometer-sized structures despite the initial sprayed droplets being typically a few tens of microns in diameter. The size and morphology of the resulting structures is not only affected by the solvent properties and drying kinetics, but also by Coulomb fission owing to the high surface charge density that the droplets build up upon evaporation. In this work we modulate the charge density of the droplets by inducing ionic wind along the spray, and produce mesoscopic structures. Using WO3 as an example, we show that the technique provides a practical way to control the morphology of thin films produced by ESD. ...