The Gouy phase, sometimes called the focal phase anomaly, is the curious effect that in the vicinity of its focus a diffracted field, compared to a non-diffracted, converging spherical wave of the same frequency, undergoes a rapid phase change by an amount of ?. We theoretically investigate the phase behavior and the polarization ellipse of a strongly focused, radially polarized beam. We find that the significant variation of the state of polarization in the focal region, is a manifestation of the different Gouy phases that the two electric field components undergo.