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Lenka Pereira Arias-Bouda
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User-centered co-development of Artificial Intelligence applications
Towards automated vertebral fracture assessment
Master thesis
(2021)
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J.M. Mostert, Willem Grootjans, Daphne D. D. Rietbergen, Lenka Pereira Arias-Bouda, J. Harlaar, Lieselot van Erven
Vertebral fractures are the most common osteoporotic fractures, with a prevalence of 12-20% in Europe, making them a major health problem because of the associated morbidity, mortality and costs. Without adequate treatment, vertebral fractures are often followed by subsequent fractures, leading to further invalidation and deterioration of health. Therefore, early detection of vertebral fractures is important so preventative treatment can be initiated.
Vertebral fracture assessment (VFA) using Dual-Energy X-ray Absorptiometry (DXA) equipment is an imaging technique in which a lateral image of the spine is made. With vertebral morphometry, vertebral heights are measured and fractures are identified when vertebral height is lower than expected. However, vertebral morphometry is time and labor-intensive, and is subject to inter-operator variability. Automating VFA using Artificial Intelligence (AI) could help to overcome these limitations. We employed a co-development approach, aiming to create an AI-based tool to automatically perform vertebral morphometry on VFA images to identify vertebral fractures.
Firstly, we conducted a literature review to investigate the current use of AI in quantitative DXA imaging in a broad sense (Chapter 2). Besides VFA, other quantitative parameters describing bone macrogeometry and microgeometry can be extracted from DXA images. Incorporating these risk factors into multivariate prediction models could improve the identification of those at risk of fracture and help in clinical decision making. Although still in development, AI has been successfully applied in aid of fracture risk assessment, showing promising results.
In Chapter 3, the results of our reader study are described, evaluating VFA with manual vertebral morphometry as it is currently performed. This study served as a baseline measurement to quantify the effort needed to perform manual VFA and assess the potential value of automating VFA. The average annotation time per VFA image was 259 seconds. Although the intraclass correlation for vertebral height measurements between different readers was high, inter-observer agreement for fracture classification was only poor to moderate.
Together with our industry partner, we developed an AI-based software tool to perform vertebral morphometry. This tool is still in development, and we evaluated its current performance and potential impact in the study described in Chapter 4. Although its current standalone performance is suboptimal and shows room for improvement, this initial investigation showed that automated VFA has the potential to significantly reduce the required reader time.
Finally, in Chapter 5 we reflect on our user-centered co-development process and the next steps to bring our AI tool to market. We believe that collaboration between academic healthcare institutions and industry are essential for successful development of AI products. Validation of these products throughout the development process and actively involving intended users should be done. In the near future, vertebral fracture assessment can be supported by our AI-based application, potentially leading to lower annotation times and improving clinical workflow. However, further improvements have to be made and independent validation is required before market access. ...
Vertebral fracture assessment (VFA) using Dual-Energy X-ray Absorptiometry (DXA) equipment is an imaging technique in which a lateral image of the spine is made. With vertebral morphometry, vertebral heights are measured and fractures are identified when vertebral height is lower than expected. However, vertebral morphometry is time and labor-intensive, and is subject to inter-operator variability. Automating VFA using Artificial Intelligence (AI) could help to overcome these limitations. We employed a co-development approach, aiming to create an AI-based tool to automatically perform vertebral morphometry on VFA images to identify vertebral fractures.
Firstly, we conducted a literature review to investigate the current use of AI in quantitative DXA imaging in a broad sense (Chapter 2). Besides VFA, other quantitative parameters describing bone macrogeometry and microgeometry can be extracted from DXA images. Incorporating these risk factors into multivariate prediction models could improve the identification of those at risk of fracture and help in clinical decision making. Although still in development, AI has been successfully applied in aid of fracture risk assessment, showing promising results.
In Chapter 3, the results of our reader study are described, evaluating VFA with manual vertebral morphometry as it is currently performed. This study served as a baseline measurement to quantify the effort needed to perform manual VFA and assess the potential value of automating VFA. The average annotation time per VFA image was 259 seconds. Although the intraclass correlation for vertebral height measurements between different readers was high, inter-observer agreement for fracture classification was only poor to moderate.
Together with our industry partner, we developed an AI-based software tool to perform vertebral morphometry. This tool is still in development, and we evaluated its current performance and potential impact in the study described in Chapter 4. Although its current standalone performance is suboptimal and shows room for improvement, this initial investigation showed that automated VFA has the potential to significantly reduce the required reader time.
Finally, in Chapter 5 we reflect on our user-centered co-development process and the next steps to bring our AI tool to market. We believe that collaboration between academic healthcare institutions and industry are essential for successful development of AI products. Validation of these products throughout the development process and actively involving intended users should be done. In the near future, vertebral fracture assessment can be supported by our AI-based application, potentially leading to lower annotation times and improving clinical workflow. However, further improvements have to be made and independent validation is required before market access. ...
Vertebral fractures are the most common osteoporotic fractures, with a prevalence of 12-20% in Europe, making them a major health problem because of the associated morbidity, mortality and costs. Without adequate treatment, vertebral fractures are often followed by subsequent fractures, leading to further invalidation and deterioration of health. Therefore, early detection of vertebral fractures is important so preventative treatment can be initiated.
Vertebral fracture assessment (VFA) using Dual-Energy X-ray Absorptiometry (DXA) equipment is an imaging technique in which a lateral image of the spine is made. With vertebral morphometry, vertebral heights are measured and fractures are identified when vertebral height is lower than expected. However, vertebral morphometry is time and labor-intensive, and is subject to inter-operator variability. Automating VFA using Artificial Intelligence (AI) could help to overcome these limitations. We employed a co-development approach, aiming to create an AI-based tool to automatically perform vertebral morphometry on VFA images to identify vertebral fractures.
Firstly, we conducted a literature review to investigate the current use of AI in quantitative DXA imaging in a broad sense (Chapter 2). Besides VFA, other quantitative parameters describing bone macrogeometry and microgeometry can be extracted from DXA images. Incorporating these risk factors into multivariate prediction models could improve the identification of those at risk of fracture and help in clinical decision making. Although still in development, AI has been successfully applied in aid of fracture risk assessment, showing promising results.
In Chapter 3, the results of our reader study are described, evaluating VFA with manual vertebral morphometry as it is currently performed. This study served as a baseline measurement to quantify the effort needed to perform manual VFA and assess the potential value of automating VFA. The average annotation time per VFA image was 259 seconds. Although the intraclass correlation for vertebral height measurements between different readers was high, inter-observer agreement for fracture classification was only poor to moderate.
Together with our industry partner, we developed an AI-based software tool to perform vertebral morphometry. This tool is still in development, and we evaluated its current performance and potential impact in the study described in Chapter 4. Although its current standalone performance is suboptimal and shows room for improvement, this initial investigation showed that automated VFA has the potential to significantly reduce the required reader time.
Finally, in Chapter 5 we reflect on our user-centered co-development process and the next steps to bring our AI tool to market. We believe that collaboration between academic healthcare institutions and industry are essential for successful development of AI products. Validation of these products throughout the development process and actively involving intended users should be done. In the near future, vertebral fracture assessment can be supported by our AI-based application, potentially leading to lower annotation times and improving clinical workflow. However, further improvements have to be made and independent validation is required before market access.
Vertebral fracture assessment (VFA) using Dual-Energy X-ray Absorptiometry (DXA) equipment is an imaging technique in which a lateral image of the spine is made. With vertebral morphometry, vertebral heights are measured and fractures are identified when vertebral height is lower than expected. However, vertebral morphometry is time and labor-intensive, and is subject to inter-operator variability. Automating VFA using Artificial Intelligence (AI) could help to overcome these limitations. We employed a co-development approach, aiming to create an AI-based tool to automatically perform vertebral morphometry on VFA images to identify vertebral fractures.
Firstly, we conducted a literature review to investigate the current use of AI in quantitative DXA imaging in a broad sense (Chapter 2). Besides VFA, other quantitative parameters describing bone macrogeometry and microgeometry can be extracted from DXA images. Incorporating these risk factors into multivariate prediction models could improve the identification of those at risk of fracture and help in clinical decision making. Although still in development, AI has been successfully applied in aid of fracture risk assessment, showing promising results.
In Chapter 3, the results of our reader study are described, evaluating VFA with manual vertebral morphometry as it is currently performed. This study served as a baseline measurement to quantify the effort needed to perform manual VFA and assess the potential value of automating VFA. The average annotation time per VFA image was 259 seconds. Although the intraclass correlation for vertebral height measurements between different readers was high, inter-observer agreement for fracture classification was only poor to moderate.
Together with our industry partner, we developed an AI-based software tool to perform vertebral morphometry. This tool is still in development, and we evaluated its current performance and potential impact in the study described in Chapter 4. Although its current standalone performance is suboptimal and shows room for improvement, this initial investigation showed that automated VFA has the potential to significantly reduce the required reader time.
Finally, in Chapter 5 we reflect on our user-centered co-development process and the next steps to bring our AI tool to market. We believe that collaboration between academic healthcare institutions and industry are essential for successful development of AI products. Validation of these products throughout the development process and actively involving intended users should be done. In the near future, vertebral fracture assessment can be supported by our AI-based application, potentially leading to lower annotation times and improving clinical workflow. However, further improvements have to be made and independent validation is required before market access.
Artificial intelligence in breast-specific gamma imaging
Exploring the possibilities of automation of breast cancer detection and classification
Master thesis
(2021)
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J.R.J. Willemse, Lenka Pereira Arias-Bouda, W. Grootjans, Floris H.P. van Velden
Introduction
Breast cancer is the most frequently diagnosed type of cancer in women in 2020. Treatment and prognosis of breast cancer is highly dependent on early and accurate diagnosis. In recent years, many studies have evaluated the use of artificial intelligence for the detection of breast cancer in mammographic images. Another imaging modality, breast-specific gamma imaging (BSGI), or molecular breast imaging, has not yet been subject to AI algorithms to detect breast cancer. In this paper, we aim to develop and evaluate convolutional neural networks (CNNs) that can detect malignancies in breast-specific gamma imaging, and evaluate the efficacy of different machine learning classifiers to classify breast tumors based on estrogen receptor (ER) status, progesterone receptor (PR) status and human epidermal growth factor receptor 2 (HER2-neu) status.
Methods
Three CNNs were created and trained and tested on a total of 3,503 BSGI images. The models varied in complexity in terms of convolutional layers and filter sizes. A semi quantitative lesion segmentation was created based on adaptive thresholding and shape and location analysis. Radiomics features were extracted, and univariate feature selection was applied to disregard redundant features. Different machine learning classifiers, which are widely used in literature for binary classification problems, were evaluated.
Results
In detecting malignancies in a dataset containing clean breasts and breast with malignant lesions, the best performing network reached an area under the receiving operating characteristic (AUROC) of 0.93, while an AUROC of 0.88 was achieved when using the same networks in the classification of malignant versus benign lesions. The best performing machine learning classifiers were the linear discriminating analysis (LDA) classifier for ER and PR status, reaching accuracies of 75% in both receptors. In Her2-neu prediction using machine learning, the best accuracy of 69% was achieved by the RF classifier.
Discussion & conclusions
Based on the results presented in this paper, CNNs can accurately detect malignancies in BSGI images, and discriminate malignancies from benign lesions to a certain extent. The combination of radiomics and machine learning, however, is in its current implementation not accurate enough to predict the ER, PR and Her2-neu status in BSGI images. Future research, however, could focus on using a combination of imaging modalities, such as BSGI, MRI and mammography to improve the predictive accuracy of machine learning.
...
Introduction
Breast cancer is the most frequently diagnosed type of cancer in women in 2020. Treatment and prognosis of breast cancer is highly dependent on early and accurate diagnosis. In recent years, many studies have evaluated the use of artificial intelligence for the detection of breast cancer in mammographic images. Another imaging modality, breast-specific gamma imaging (BSGI), or molecular breast imaging, has not yet been subject to AI algorithms to detect breast cancer. In this paper, we aim to develop and evaluate convolutional neural networks (CNNs) that can detect malignancies in breast-specific gamma imaging, and evaluate the efficacy of different machine learning classifiers to classify breast tumors based on estrogen receptor (ER) status, progesterone receptor (PR) status and human epidermal growth factor receptor 2 (HER2-neu) status.
Methods
Three CNNs were created and trained and tested on a total of 3,503 BSGI images. The models varied in complexity in terms of convolutional layers and filter sizes. A semi quantitative lesion segmentation was created based on adaptive thresholding and shape and location analysis. Radiomics features were extracted, and univariate feature selection was applied to disregard redundant features. Different machine learning classifiers, which are widely used in literature for binary classification problems, were evaluated.
Results
In detecting malignancies in a dataset containing clean breasts and breast with malignant lesions, the best performing network reached an area under the receiving operating characteristic (AUROC) of 0.93, while an AUROC of 0.88 was achieved when using the same networks in the classification of malignant versus benign lesions. The best performing machine learning classifiers were the linear discriminating analysis (LDA) classifier for ER and PR status, reaching accuracies of 75% in both receptors. In Her2-neu prediction using machine learning, the best accuracy of 69% was achieved by the RF classifier.
Discussion & conclusions
Based on the results presented in this paper, CNNs can accurately detect malignancies in BSGI images, and discriminate malignancies from benign lesions to a certain extent. The combination of radiomics and machine learning, however, is in its current implementation not accurate enough to predict the ER, PR and Her2-neu status in BSGI images. Future research, however, could focus on using a combination of imaging modalities, such as BSGI, MRI and mammography to improve the predictive accuracy of machine learning.