Evaluation of the influence of shape priors in deep learning based cardiac segmentation
D.A. Joy (TU Delft - Mechanical Engineering)
M. Peirlinck – Mentor (TU Delft - Mechanical Engineering)
M.A. Castañeda Garcia – Graduation committee member (TU Delft - Electrical Engineering, Mathematics and Computer Science)
J.C.F. de Winter – Coach (TU Delft - Mechanical Engineering)
S.P. Dr Pirola – Coach (TU Delft - Mechanical Engineering)
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Abstract
Cardiovascular diseases (CVDs) are a group of disorders of the heart and blood vessels.
CVDs are the leading cause of death worldwide. To diagnose and treat CVDs, clinicians and cardiologists use multiple noninvasive imaging techniques. These scans are used to segment certain structures of the heart. Deep learning-based cardiac segmentation on short-axis cardiac magnetic resonance images (CMRI) has gained popularity over the past few years because of its generalisability and accuracy. This has exponentially reduced contouring times for clinicians. The development of such deep learning techniques has seen a common trend. In order to accommodate learning for larger cardiac datasets, the depth and size of segmentation networks have been increased. Unfortunately, the environmental impact of exploding such networks is not taken into account. One solution to mitigate having computationally expensive networks is to incorporate anatomical knowledge in the form of shape priors. The Gridnet and UNet with a shape prior are computationally efficient networks that are used to evaluate segmentation performance on a large and varied cardiac dataset (Combination of the Automated Cardiac Diagnosis Challenge - ACDC and Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation challenge - M&M datasets). On average, these networks segment CMRIs with an average dice score of 0.87 and a Hausdorff distance of 11.7mm. In parallel, one of the major issues in cardiac technology is the under-representation of women in cardiac datasets. Purposefully curated cardiac datasets such as ACDC and M&M try and maintain equal representation. In real-world scenarios, this might not always be the case. Clinical trials to collect such data often report female representation as low as 25%. Evaluation of segmentation performance between a balanced and skewed dataset is conducted. This is to address if bias in such cardiac training datasets affects the performance of segmentation networks between male and female test patients.