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Polimac, Dean (author)In this study we introduce a different approach to the primer selection problem in the AmpliDiff [12] algorithm. Two different metrics, being the Hamming distance [2], and the Levenshtein distance [4], are used to compute sets of similar primers. This is done such that locations where mismatches between the primers and the target sequence can...bachelor thesis 2024
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Roest, Vivian (author)This paper examines the release practices of Java Maven Repositories on GitHub. Most prior research in this vein has been done on Maven Central, the largest Maven package repository. However, GitHub hosts 15.5 million Java repositories, and is left untapped. Additionally of interest is the fact that GitHub provides a competitor to Maven Central,...bachelor thesis 2024
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Iftimescu, Vlad (author)Smoking has been one of the great threats to health in recent years, being strongly correlated with multiple negative health consequences, including lung cancer. Recent research suggests that artificial intelligence chatbots can be effective in persuading healthy behavior change. However, these chatbots usually rely on persuasive techniques to...bachelor thesis 2024
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Kirbeyi, Doruk (author)This research explores the landscape of dataset generation through the lens of Probabilistic Principal Component Analysis (PPCA) and β-Conditional Variational Auto-encoder (β-CVAE) models. We conduct a comparative analysis of their respective capabilities in reproducing datasets that mirror the distribution of the original data that comes from a...bachelor thesis 2024
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Kuļikovskis, Gints (author)This study conducts an investigation of the challenges faced by aging projects in Maven Central, focusing on the issue of missing dependencies. Using the Maven Explorer indexer, we systematically examine the correlation between the age of a project and the frequency of dependency resolution failures. Our analysis reveals a notable trend: older...bachelor thesis 2024
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Van Opstal, Quinten (author)Federated learning provides a lot of opportunities, especially with the built-in privacy considerations. There is however one attack that might compromise the utility of federated learning: backdoor attacks [14]. There are already some existing defenses, like flame [13] but they are computationally expensive [14]. This paper evaluates a version...bachelor thesis 2024
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Bakker, Bo (author)Data-driven approaches are a promising new addition to the list of available strategies for solving Partial Differential Equations (PDEs). One such approach, the Principal Component Analysis-based Neural Network PDE solver, can be used to learn a mapping between two function spaces, corresponding to a PDE. However, the practical limitations of...bachelor thesis 2024
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Kiste, Amund (author)Solving Partial Differential Equations (PDEs) in engineering such as Navier-Stokes is incredibly computationally expensive and complex. Without analytical solutions, numerical solutions can take ages to simulate at great expense. In order to reduce this cost, neural networks may be used to compute approximations of the solution for use during...bachelor thesis 2024
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Karskens, Samuel (author)Abundance estimation with the use of environmental samples has been used during the SARS-CoV-2 pandemic to identify the abundances of different lineages. AmpliDiff, an algorithm that tries to find parts of DNA that can differentiate between different input genomes was used on a SARS-CoV-2 dataset to find these amplicons. The AmpliDiff algorithm...bachelor thesis 2024
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Taklimi, Sam (author)The objective of this project is to train a model that transforms a tree with its foliage into only its branch structure. This is achieved by employing machine-learning techniques, specifically Generative Adverserial Networks (GANs). By utilizing the proposed method, a predictive model is built that automatically minimizes its own error function...bachelor thesis 2024
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van der Schoot, Mathijs (author)The Maven ecosystem, with an emphasis on Maven Central, contains a plethora of toy-projects. This paper addresses this problem by formulating a core containing the pillars of the Maven ecosystem, such that it can be exploited for research concerning li- brary quality. The construction of said core is done by analyzing the availability, relevance...bachelor thesis 2024
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Marczuk, Wojciech (author)Scratch is a block-based programming language. It is designed to be simple and syntax error avoidant. This makes Scratch an accessible platform for cultivating coding skills. Many young learners are taught about different programming skills using various project types as examples. For instance, games are used as an engagement tool, and various...bachelor thesis 2024
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Lacombe, Pablo (author)This paper presents a comprehensive exploration of a novel method combining Principal Component Analysis (PCA) and Neural Networks (NN) to efficiently solve Partial Differential Equations (PDEs), a fundamental challenge in modeling a wide range of real-world phenomena. Our research extends the work of Bhattacharya et al. by focusing on PCA for...bachelor thesis 2024
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Mozafari, Erfan (author)The most established and widely used methods for analysing tree images for tasks such as geometry analysis, segmentation and classification often rely on pixels. In this paper, the applicability of analyzing tree geometry based on a graph representation rather than a pixel-based approach is pursued. To do so, 2D renders of different species of...bachelor thesis 2024
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Gafton, Dinu (author)Learning curves are useful to determine the amount of data needed for a certain performance. The conventional belief is that increasing the amount of data improves performance. However, recent work challenges this assumption, and shows nonmonotonic behaviors of certain learners on certain problems. This paper presents a new approach for...bachelor thesis 2024
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van der Poel, Jenneke (author)Staphylococcus aureus and Pseudomonas aeruginosa are two species of bacteria that are involved in numerous conditions, including lung infections and chronic wound infections. The aim of this project was to study the short-term interactions that occur when P. aeruginosa first encounters an established S. aureus colony, which it then seeks to...bachelor thesis 2024
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Nenovski, Lazar (author)Abstract— Federated Learning (FL) makes it possible for a network of clients to jointly train a machine learning model, while also keeping the training data private. There are several approaches when designing a FL network and while most existing research is focused on a single-server design, new and promising variations are arising that make...bachelor thesis 2024
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van der Meulen, Jan (author)Federated learning (FL) is a privacy preserving machine learning approach which allows a machine learning model to be trained in a distributed fashion without ever sharing user data. Due to the large amount of valuable text and voice data stored on end-user devices, this approach works particularly well for natural language processing (NLP)...bachelor thesis 2024
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Verlooy, Bas (author)The Alexandria3K library, a versatile Python-based tool, has been expanded to include the integra- tion of the PubMed dataset, enriching its capabil- ities in the analysis of scientific papers. Origi- nally supporting major datasets like Crossref and US patents, and smaller yet significant datasets like ORCID. The addition of PubMed enables in...bachelor thesis 2024
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de Bruin, Rowan (author)This study explores the feasibility of categorizing GitHub projects based on their interactions and activities, aiming to assist both researchers and practitioners in navigating the vast landscape of open-source software. Through experiments and analysis, key attributes contributing to project categorization are identified, paving the way for...bachelor thesis 2024