Topology of molecular interaction networks

Molecular interactions are often represented as network models which have become the common language of many areas of biology. Graphs serve as convenient mathematical representations of network models and have themselves become objects of study. Their topology has been intensively researched over the last decade after evidence was found that...

Do greedy assortativity optimization algorithms produce good results?

Correlating the topology of a metabolic network with its growth capacity

Metabolic network destruction: Relating topology to robustness

Biological networks exhibit intriguing topological properties such as small-worldness. In this paper, we investigate whether the topology of a metabolic network is related to its robustness. We do so by perturbing a metabolic system in silico, one reaction at a time and studying the correlations between growth, as predicted by flux balance...

Probabilistic relevance ranking for collaborative filtering

Collaborative filtering is concerned with making recommendations about items to users. Most formulations of the problem are specifically designed for predicting user ratings, assuming past data of explicit user ratings is available. However, in practice we may only have implicit evidence of user preference; and furthermore, a better view of the...

Personalization on a peer-to-peer television system

We introduce personalization on Tribler, a peer-to-peer (P2P) television system. Personalization allows users to browse programs much more efficiently according to their taste. It also enables to build social networks that can improve the performance of current P2P systems considerably, by increasing content availability, trust and the...

Wi-Fi Walkman: A wireless handhold that shares and recommends music on peer-to-peer networks

The Wi-Fi walkman is a mobile multimedia application that we developed to investigate the technological and usability aspects of human-computer interaction with personalized, intelligent and context-aware wearable devices in peer-to-peer wireless environments such as the future home, office, or university campuses. It is a small handheld device...