Critical considerations and effective assessment of extraction and recovery processes of RAP

With the increasing shortage of resources, the reuse of recycled asphalt pavements (RAP) in pavement engineering is considered as a sustainable technology. Challenges posed by common extraction and recovery methods may result in misjudgment of asphalt pavement performance. In this study, we investigate the optimization of extraction and...

A method for identifying protein complexes with the features of joint co-localization and joint co-expression in static PPI networks

Identifying protein complexes in static protein-protein interaction (PPI) networks is essential for understanding the underlying mechanism of biological processes. Proteins in a complex are co-localized at the same place and co-expressed at the same time. We propose a novel method to identify protein complexes with the features of joint co...

Reconstructing phylogeny by aligning multiple metabolic pathways using functional module mapping

Comparison of metabolic pathways provides a systematic way for understanding the evolutionary and phylogenetic relationships in systems biology. Although a number of phylogenetic methods have been developed, few efforts have been made to provide a unified phylogenetic framework that sufficiently reflects the metabolic features of organisms....

A method for finding metabolic pathways using atomic group tracking

A fundamental computational problem in metabolic engineering is to find pathways between compounds. Pathfinding methods using atom tracking have been widely used to find biochemically relevant pathways. However, these methods require the user to define the atoms to be tracked. This may lead to failing to predict the pathways that do not...

Spectroscopic evidence for bulk-band inversion and three-dimensional massive Dirac fermions in ZrTe₅

Three-dimensional topological insulators (3D TIs) represent states of quantum matters in which surface states are protected by timereversal symmetry and an inversion occurs between bulk conduction and valence bands. However, the bulk-band inversion, which is intimately tied to the topologically nontrivial nature of 3D Tis, has rarely been...

Aligning Metabolic Pathways Exploiting Binary Relation of Reactions

Metabolic pathway alignment has been widely used to find one-to-one and/or one-to-many reaction mappings to identify the alternative pathways that have similar functions through different sets of reactions, which has important applications in reconstructing phylogeny and understanding metabolic functions. The existing alignment methods...