Attention-based deep learning for DNA repair outcome prediction: Learning how the cell repairs DNA breaks using local sequence context

Recent advancements in quantification of repair outcomes of CRISPR-Cas9 mediated double-stranded DNA breaks (DSBs) have allowed for the use of machine learning for predicting the frequencies of these repair outcomes. Local DNA sequence context influences the frequencies of mutations that arise when DNA gets repaired after it is targeted by...

Utilizing Lingual Structures to Enhance Transformer Performance in Source Code Completions

We explored the effect of augmenting a standard language model’s architecture (BERT) with a structural component based on the Abstract Syntax Trees (ASTs) of the source code. We created a universal abstract syntax tree structure that can be applied to multiple languages to enable the model to work in a multilingual setting. We adapted the...