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van den Berg, A.A. (author)During transcription RNA polymerase (RNAP) moves along a DNA molecule to copy the information on the DNA to an RNA molecule. Many textbook pictures show an RNAP sliding along empty DNA, but in reality it is crowded on the DNA and RNAP competes for space with many proteins such as other RNAP’s and histones. Coverage of DNA by histones is...doctoral thesis 2017
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Wang, Y. (author), Oord, Ramon (author), van den Berg, D. (author), Weckhuysen, Bert M. (author), Makkee, M. (author)Currently commercial NO<sub>x</sub> removal (DeNO<sub>x</sub>) abatement systems for lean-burn engines exceed regulation limits on the road for NO<sub>x</sub> emissions. Commercial DeNO<sub>x</sub> catalysts exhibit poor performance in the selective conversion of NO to N<sub>2</sub>, especially at high temperature and high gas hourly space...journal article 2017
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Noël, Brice (author), van den Berg, J.W. (author), Lhermitte, S.L.M. (author), Wouters, B. (author), Machguth, Horst (author), Howat, Ian (author), Citterio, M. (author), Moholdt, G (author), Lenaerts, Jan T M (author), van den Broeke, Michiel R. (author)Melting of the Greenland ice sheet (GrIS) and its peripheral glaciers and ice caps (GICs) contributes about 43% to contemporary sea level rise. While patterns of GrIS mass loss are well studied, the spatial and temporal evolution of GICs mass loss and the acting processes have remained unclear. Here we use a novel, 1 km surface mass balance...journal article 2017
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- Bodde, W.P. (author), McCall, R.T. (author), Jansen, M.H.P. (author), van den Berg, Annemijn (author), Roelvink, D. (author) conference paper 2017
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Leenstra, H. (author), van den Berg, Jan (author), van Wee, G.P. (author)Connected- en de autonoom rijdende auto’s communiceren constant met hun omgeving. Deze rijdende computers zijn nooit ontworpen om kwaadwillende hackers buiten te houden. Het is tijd om de ICT architectuur in onze auto’s grondig te herzien om ervoor te zorgen dat de fysieke consumentenveiligheid gegarandeerd wordt. Onderzoek vanuit de Cyber...journal article 2017
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van den Berg, A.A. (author), Depken, S.M. (author)During eukaryotic transcription, RNA polymerase (RNAP) translocates along DNA molecules covered with nucleosomes and other DNA binding proteins. Though the interactions between a single nucleosome and RNAP are by now fairly well understood, this understanding has not been synthesized into a description of transcription on crowded genes, where...journal article 2017
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van den Berg, E.M. (author), Perdigão Elisiário, M. (author), Kuenen, J.G. (author), Kleerebezem, R. (author), van Loosdrecht, Mark C.M. (author)Denitrification and dissimilatory reduction to ammonium (DNRA) are competing nitrate-reduction processes that entail important biogeochemical consequences for nitrogen retention/removal in natural and man-made ecosystems. The nature of the available carbon source and electron donor have been suggested to play an important role on the outcome of...journal article 2017
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van den Berg, E.M. (author), Rombouts, J.L. (author), Kuenen, J.G. (author), Kleerebezem, R. (author), van Loosdrecht, Mark C.M. (author)Denitrification and dissimilatory nitrate reduction to ammonium (DNRA) are two microbial processes that compete for oxidized nitrogen compounds in the environment. The objective of this work was to determine the role of nitrite versus nitrate as terminal electron acceptor on the competition between DNRA and denitrification. Initially, a mixed...journal article 2017
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Ma, M. (author), Herdeiro Teixeira, A.M. (author), van den Berg, Jan (author), Palensky, P. (author)Low-voltage distribution grids experience a rising penetration of inverter-based, distributed generation. In order to not only contribute to but also solve voltage problems, these inverters are increasingly asked to participate in intelligent grid controls. Communicating inverters implement distributed voltage droop controls. The impact of...journal article 2017
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van Gelder, Celia W.G. (author), Hooft, Rob W.W. (author), van Rijswijk, Merlijn N. (author), van den Berg, Linda (author), Kok, Ruben G. (author), Reinders, M.J.T. (author), Mons, Barend (author), Heringa, Jaap (author)This review provides a historical overview of the inception and development of bioinformatics research in the Netherlands. Rooted in theoretical biology by foundational figures such as Paulien Hogeweg (at Utrecht University since the 1970s), the developments leading to organizational structures supporting a relatively large Dutch bioinformatics...journal article 2017
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van den Berg, Daniël (author), Glans, Rebecca N. (author), de Koning, Dorian (author), Kuipers, F.A. (author), Lugtenburg, A.J.C. (Jochem) (author), Polachan, Kurian (author), Venkata, Prabhakar T. (author), Singh, Chandramani (author), Turkovic, B. (author), van Wijk, Bryan (author)The Tactile Internet presently constitutes a vision of an Internet over which, in addition to current communications modalities, a sense of touch can be transported. In that case, people would no longer need to be physically near the systems they operate, but could control them remotely. The main problem that needs to be solved to realize the...journal article 2017
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van der Walle, P (author), Kramer, E. (author), van der Donck, J.C.J. (author), Mulckhuyse, W (author), Nijsten, L. (author), Bernal Arango, F.A. (author), de Jong, A. (author), van Zeijl, E. (author), Spruit, H. E.T. (author), van den Berg, J.H. (author), Nanda, G. (author), van Langen-Suurling, A.K. (author), Alkemade, P.F.A. (author), Pereira, S.F. (author), Maas, D.J. (author)Particle defects are important contributors to yield loss in semi-conductor manufacturing. Particles need to be detected and characterized in order to determine and eliminate their root cause. We have conceived a process flow for advanced defect classification (ADC) that distinguishes three consecutive steps; detection, review and...conference paper 2017
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Aertsen, Maarten (author), Korczynski, M.T. (author), Moura, Giovane C. M. (author), Tajalizadehkhoob, S. (author), van den Berg, Jan (author)The 2013 National Security Agency revelations of pervasive monitoring have led to an "encryption rush" across the computer and Internet industry. To push back against massive surveillance and protect users' privacy, vendors, hosting and cloud providers have widely deployed encryption on their hardware, communication links, and applications....conference paper 2017
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van Driel, B.A. (author), Wezendonk, T.A. (author), van den Berg, K. J. (author), Kooyman, P.J. (author), Gascon, Jorge (author), Dik, J. (author)Titanium white (TiO<sub>2</sub>) has been widely used as a pigment in the 20th century. However, its most photocatalytic form (anatase) can cause severe degradation of the oil paint in which it is contained. UV light initiates TiO<sub>2</sub>-photocatalyzed processes in the paint film, degrading the oil binder into volatile components...journal article 2017
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Schrama, F.N.H. (author), Beunder, E.M. (author), van den Berg, B (author), Yang, Y. (author), Boom, R. (author)Sulphur removal in the ironmaking and oxygen steelmaking process is reviewed. A sulphur balance is made for the steelmaking process of Tata Steel IJmuiden, the Netherlands. There are four stages where sulphur can be removed: in the blast furnace (BF), during hot metal (HM) pretreatment, in the converter and during the secondary metallurgy (SM...journal article 2017
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Morsch, Suzanne (author), van Driel, B.A. (author), van den Berg, Klaas Jan (author), Dik, J. (author)As linseed oil has a longstanding and continuing history of use as a binder in artistic paints, developing an understanding of its degradation mechanism is critical to conservation efforts. At present, little can be done to detect the early stages of oil paint deterioration due to the complex chemical composition of degrading paints. In this...journal article 2017
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Aizenberg, Evgeni (author), van den Berg, Rosaline (author), Ez-Zaitouni, Zineb (author), van der Heijde, Désirée (author), Reijnierse, Monique (author), Dzyubachyk, Oleh (author), Lelieveldt, B.P.F. (author)Background: Evaluating inflammatory changes over time on MR images of the spine in patients with suspected axial Spondyloarthritis (axSpA) can be a labor-intensive task, requiring readers to manually search for and perceptually align a set of vertebrae between two scans. The purpose of this study was to assess the feasibility of computer...journal article 2017
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Bierens, R.H. (author), Klievink, A.J. (author), van den Berg, Jan (author)Today’s increasing connectivity creates cyber risks at personal, organizational up to societal level. Societal cyber risks require mitigation by all kinds of actors where government should take the lead due to its responsibility to protect its citizens. Since no formal global governance exists, the governmental responsibility should start at the...conference paper 2017
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van den Berg, M. (author)Extensive research is available on travel choice behaviour which occurs during evacuations in case of natural disasters. Due to the disadvantages of existing data collection techniques, more research is needed to better understand evacuation choice behaviour. The main objective of this thesis is twofold: (1) to develop, apply and assess a new...doctoral thesis 2016
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van den Berg, E.M. (author), Boleij, M. (author), Kuenen, J.G. (author), Kleerebezem, R. (author), van Loosdrecht, Mark C.M. (author)Denitrification and dissimilatory nitrate reduction to ammonium (DNRA) compete for nitrate in natural and engineered environments. A known important factor in this microbial competition is the ratio of available electron donor and elector acceptor, here expressed as Ac/N ratio (acetate/nitrate-nitrogen). We studied the impact of the Ac/N ratio...journal article 2016