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De Jong, A. (author), Pietersma, H. (author), Cordes, M. (author), Kuipers, O.P. (author), Kok, J. (author)Background: Accurate prediction of DNA motifs that are targets of RNA polymerases, sigma factors and transcription factors (TFs) in prokaryotes is a difficult mission mainly due to as yet undiscovered features in DNA sequences or structures in promoter regions. Improved prediction and comparison algorithms are currently available for identifying...journal article 2012