- document
-
Golik, Bartek (author)Analysing single-cell RNA sequencing data is becoming an increasingly tedious task as the size of data sets grows. As a proposed solution, recent discoveries suggest that these data sets can be binarized without losing much information. This in turn should allow for memory and time efficient methods of storage and computation. Numerous analyses...bachelor thesis 2023
- document
-
Van den Haak, P. (author), Cheung, M. (author)Major research efforts in Bioinformatics include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modeling of evolution. To perform these specific tasks different tools are used. Using these tools separately is a...bachelor thesis 2008
- document
-
Uljee, Jasper (author), de Vries, Yorick (author)Accurate diagnosis and treatment of patients infected with multiple strains of a pathogen is a challenging task. The use of whole genome sequencing techniques provide high potential to give proper insight into the microbial composition of human metagenomic samples. Distinguishing multiple strains of a certain species is difficult due to the high...bachelor thesis 2018
- document
-
Polshchykova, Zoya (author)In this thesis, gate set tomography (GST) has been conducted on the nitrogen vacancy center (NV). Gate set tomography is a protocol for characterization of logic operations (gates) on quantum computing processors. The NV’s electron served as a qubit. The quantum circuits were run both experimentally as well as on an NV-simulator. GST is...bachelor thesis 2022
- document
- Van Heijst, W.N. (author) bachelor thesis 2012
- document
-
van der Lugt, Mart (author)Since the start of the SARS-CoV-2 pandemic, the monitoring of SARS-CoV-2 by way of viral RNA sequencing of wastewater has proven to be an efficient and effective way of estimating COVID-19 cases in population groups. A recently developed pipeline also enables us to estimate SARS-CoV-2 variant abundance using viral samples from wastewater. This...bachelor thesis 2022
- document
-
Al-Obaidi, Rami (author)Clustering is a group of (unsupervised) machine learning algorithms used to categorize data into clusters. The most popular clustering algorithm is k-means clustering. K-means clustering clusters the data into k clusters where a cluster is represented by the mean of the data points called a centroid. Instead of using the mean as a centroid, a...bachelor thesis 2021
- document
-
Andreadis, Kostas (author)The last few years have shown promising developments in single-molecule protein sequencing using a biological nanopore. Using only one membrane pore in a salt buffer, an applied potential creates a measurable ion current through the pore’s constriction. If a small molecule passes through the pore, this disruption is visible as a characteristic...bachelor thesis 2022
- document
-
Kalia, Yash (author)Monitoring of SARS-CoV-2 variants is crucial to efforts in combating the COVID-19 pandemic. Lineage level abundance estimates for SARS-CoV-2 can be obtained from viral material present in domestic wastewater. The abundance predictions can be made at different levels of granularity-individual lineage level(high granularity) or variant level(low...bachelor thesis 2022
- document
-
Smit, Jean-Paul (author)Deep-learning (DL) models could greatly advance the automation of fact-checking, yet have not widely been adopted by the public because of their hard-to-explain nature. Although various techniques have been proposed to use local explanations for the behaviour of DL models, little attention has been paid to global explanations. <br/>In response,...bachelor thesis 2023
- document
-
Van den Haak, W.P. (author), Cheung, M. (author)Major research efforts in Bioinformatics include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modeling of evolution. To perform these specific tasks different tools are used. Using these tools separately is a...bachelor thesis 2008
- document
-
van Leeuwen, Lot (author)Every day we produce an extremely high amount of data and a significant portion of this data is archival data. It is an important challenge to save this data in a cheap and environmentally friendly way. The current methods to save archival data are sufficient, but improvements can be made. Synthetic DNA based data storage is a great choice to do...bachelor thesis 2020
- document
-
Ros, Robin (author)There are several ways to write the number 5 as a sum of positive integers, disregarding order. A quick calculation shows that this can be done in 7 ways: 5 = 5, 5 = 4 + 1, 5 = 3 + 2, 5 = 3 + 1 + 1, 5 = 2 + 2 + 1, 5 = 2 + 1 + 1 + 1 and 5 = 1 + 1 + 1 + 1 + 1. In the same way, we can count the number of ways for each integer n. Although this...bachelor thesis 2018
- document
-
Remmelzwaal, Dirk (author)Locality mapping captures the displacement imposed by a mirroring surface in anamorphic art. Establishing this mapping for a physical mirror, however, is a difficult task. Applying pattern matching on the distorted reflection is a promising technique, though existing pattern matching strategies are often ill equipped for this particular task....bachelor thesis 2021
- document
-
den Boon, Kevin (author)AmpliDiff provides a method which takes a list of genomes and their lineages, and finds a set of amplicons and their primers in such a way that these amplicons can be used to differentiate between the lineages of a specific virus. While it has been shown that AmpliDiff find results comparable to whole genome sequencing for SARS-CoV-2 when...bachelor thesis 2024
- document
-
Van Beek, D.M. (author)This report is made as part of the Master's Thesis project of the master Computer Science, track Bioinformatics at the Delft University of technology. The main focus of this document lies on the paper that is written as the result of my research on the detection of copy number variations using next generation sequencing data. In the future it is...master thesis 2012
- document
-
Kolodziejczyk, P.T. (author)Companies can lose a substantial portion of their revenues due to deterioration in value of their products as a result of processing impediments, which might occur in the entire supply chain. Sometimes, the reasons for a decline in product quality are not fully understood, and thus there are no appropriate measures taken to prevent it. Yet, it...master thesis 2015
- document
- Huurman, Marloes (author) master thesis 2017
- document
-
Noordijk, N.A. (author)Crevasse splay complexes in floodplain sequences are potential low net-to-gross tough gas reservoirs. The porosity and permeability of these reservoirs is low, but lateral amalgamation by compensational stacking can create extensive lobe-shaped sediment bodies with reservoir potential. The aim of this thesis is to characterize the development of...master thesis 2014
- document
-
Nadeem, Azqa (author)Developing malware variants is extremely cheap for attackers because of the availability of various obfuscation tools. These variants can be grouped in malware families, based on information retrieved from their static and dynamic analysis. Dynamic, network-level analysis of malware shows its core behavior since it captures the interaction with...master thesis 2018