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Trebotich, D. (author), Miller, G.H. (author), Bybee, M.D. (author)We present a new method for particle interactions in polymer models of DNA. The DNA is represented by a bead-rod polymer model. The main objective in this work is to implement short range forces to properly model polymer-polymer and polymer-surface interactions. We will discuss two methods for these interactions: (1) a new rigid constraint...conference paper 2006