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D. Doğan

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Doctoral thesis (2025) - D. Doğan, G.J.T. Leus, P. Kruizinga
Ultrasound is a widely used real-time imaging modality to diagnose patients. Ultrasound imaging has several modes of operation such as ultrafast Doppler which, due to the high frame-rates, is particularly suited to image blood flow inside bodily organs such as the brain. Despite its success, the ultrafast imaging technique has some downsides such as lower overall signal-to-noise ratio (SNR), especially in deeper regions due to the use of unfocussed transmissions. This thesis explores the use of advanced signal processing methods such as model-based image reconstruction to regain some of the loss in SNR.

Chapters 3, 4, 5, and 6 of the thesis focus on advanced model-based image reconstruction techniques, incorporating complex priors or statistical assumptions about the signal and noise instead of using a simple physical propagation model. Conventional ultrasound beamforming techniques, such as the delay-and-sum (DAS) beamformer, perform well in many clinical settings; however, they face challenges in applications requiring high structural detail or SNR, such as vascular imaging. This thesis explores deterministic and statistical model-based vascular image reconstruction techniques to improve SNR, resolution, and clarity of fine vascular details. The proposed techniques exploit the joint sparsity of the vasculature images at different time instants. These methods enhance the depiction of vascular structures while increasing SNR and suppressing background noise and artifacts. A large part of the thesis, including Chapters 4, 5 and 6, focuses on the sparse Bayesian learning (SBL) techniques. Starting with classical SBL, this thesis introduces the application of block-sparsity-based SBL techniques, such as pattern-coupled sparse Bayesian learning with fixed-point iterations and correlated sparse Bayesian learning. Although some of the proposed techniques are not computationally efficient yet for real-time ultrasound imaging, they do provide a new contribution to signal processing and computational imaging fields.

Chapter 7 of the thesis focuses on improving the ultrasound transmission to enhance the SNR. An optimized coded excitation technique has been proposed as an alternative to standard coded excitation techniques. By keeping the computational complexity toa modest level, the codes are optimized to increase the SNR without a significant loss in the image resolution. The Cramér-Rao lower bound (CRB) minimization and a faster alternative Fisher information matrix (FIM) maximization have been proposed to optimize the codes. The optimized codes are tested on simulated data to demonstrate their potential for flow imaging.

To sum up, this thesis contributes to the ultrasound blood flow imaging area through solutions on image reconstruction algorithms and ultrasound transmissions to overcome current limitations and challenges. This thesis explores using advanced modelbased signal processing methods to improve image quality. Therefore, this work contributes new strategies that can inspire future research and clinical applications in vascular ultrasound imaging.
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Journal article (2025) - Didem Dogan, Lixiang Zhu, Yuyang Hu, Johannes G. Bosch, Pieter Kruizinga, Geert Leus
Ultrafast imaging, which uses unfocussed transmissions to form images, provides very high frame rates at the cost of low signal-to-noise ratio (SNR). This loss of SNR becomes especially apparent when imaging deeper structures. Ultrafast imaging is mostly used in combination with Doppler processing. Even if we apply tissue-separation filters, they lead to significant energy loss and decrease the SNR. Previous work showed that this loss in SNR and, hence, penetration depth can be partially regained using coded transmissions. However, these codes are mostly either standard or randomly generated and can be improved with a design rooted in an optimization scheme. To address this limitation, we design an optimized code tailored to ultrasound imaging with unfocused transmissions represented by a generalized encoding matrix in a linear signal model. We employ the minimization of the Cramér-Rao lower bound (CRB) over the unknown coding matrix as a way to optimize the code. Due to the high computational cost of the resulting optimization problems, we also introduce a trace-constraint optimization problem based on the Fisher information matrix (FIM). Simulation results show that the optimized code provides higher SNR in deep image regions than previously tested coding schemes such as the Barker code, albeit with a trade-off for decreased resolution. On the other hand, the application of least-squares QR (LSQR) mitigates this resolution degradation. Lastly, the optimized code was tested in simulations using a numerical model of a clinical transducer setting, demonstrating its potential for higher SNR in ultrafast Doppler imaging. ...
Journal article (2025) - Yuyang Hu, Didem Dogan, Michael Brown, Geert Leus, Antonius F.W.van der Steen, Pieter Kruizinga, Johannes G. Bosch
Ultrasonography could allow operator-independent examination and continuous monitoring of the carotid artery (CA) but normally requires complex and expensive transducers, especially for 3-D. By employing computational ultrasound imaging (cUSi), using an aberration mask and model-based reconstruction, a monitoring device could be constructed with a more affordable simple transducer design comprising only a few elements. We aim to apply the cUSi concept to create a CA monitoring system. The system’s possible configurations for the 2-D imaging case were explored using a linear array setup emulating a cUSi device in silico, followed by in vitro testing and in vivo CA imaging. Our study shows enhanced reconstruction performance with the use of an aberrating mask, improved lateral resolution through proper choice of the mask delay variation, and more accurate reconstructions using least-squares with QR (LSQR) decomposition compared to matched filtering (MF). Together, these advancements enable B-mode reconstruction and power Doppler imaging (PDI) of the CA with sufficient quality for monitoring using a configuration of 12 transceivers coupled with a random aberration mask with a maximum delay variation of four wave periods (WPs). ...
Journal article (2024) - Didem Doğan, Geert Leus
We consider the problem of recovering complex-valued block sparse signals with unknown borders. Such signals arise naturally in numerous applications. Several algorithms have been developed to solve the problem of unknown block partitions. In pattern-coupled sparse Bayesian learning (PCSBL), each coefficient involves its own hyperparameter and those of its immediate neighbors to exploit the block sparsity. Extended block sparse Bayesian learning (EBSBL) assumes the block sparse signal consists of correlated and overlapping blocks to enforce block correlations. We propose a simpler alternative to EBSBL and reveal the underlying relationship between the proposed method and a particular case of EBSBL. The proposed algorithm uses the fact that immediate neighboring sparse coefficients are correlated. The proposed model is similar to classical sparse Bayesian learning (SBL). However, unlike the diagonal correlation matrix in conventional SBL, the unknown correlation matrix has a tridiagonal structure to capture the correlation with neighbors. Due to the entanglement of the elements in the inverse tridiagonal matrix, instead of a direct closed-form solution, an approximate solution is proposed. The alternative algorithm avoids the high dictionary coherence in EBSBL, reduces the unknowns of EBSBL, and is computationally more efficient. The sparse reconstruction performance of the algorithm is evaluated with both correlated and uncorrelated block sparse coefficients. Simulation results demonstrate that the proposed algorithm outperforms PCSBL and correlation-based methods such as EBSBL in terms of reconstruction quality. The numerical results also show that the proposed correlated SBL algorithm can deal with isolated zeros and nonzeros as well as block sparse patterns. ...
Conference paper (2023) - Didem Dogan, Geert Leus
We consider the problem of recovering block-sparse signals with unknown boundaries. Such signals arise naturally in various applications. Recent literature introduced a pattern-coupled or clustered Gaussian prior, in which each coefficient involves its own hyperparameter as well as its immediate neighbors' hyperparameters. Some methods use a hierarchical distribution making the solution vulnerable to the parameter choice. Besides, these methods mainly rely on the expectation-maximization (EM) algorithm and either require a suboptimal solution or an approximation of the hyperparameters. To address these difficulties, we propose to solve the pattern coupling problem via fixed point iterations instead of the EM algorithm. The proposed algorithm does not require any further assumptions on the hyperparameters and provides a simple update rule for the hyperparameters. Although the fixed point iterations method is an empirical strategy, it provides a fast convergence rate. The proposed algorithm is tested on a simple direction of arrival (DOA) and amplitude estimation problem. From our simulations, we see that the proposed method achieves similar reconstruction results with the state-of-the-art; however, the proposed method is faster than the existing counterparts. ...
Conference paper (2023) - Yuyang Hu, Didem Doğan, Michael Brown, Mahé Bulot, Guillaume Ferin, Geert Leus, Pieter Kruizinga, Antonius F.W. Steen, Johannes G. Bosch
It has been previously demonstrated that applying an aberrating mask for 2D compressive imaging using a low number of sensors (elements) can significantly improve image resolution, as evaluated via the point spread function. Here we investigate the potential to apply a similar approach for 3D flow monitoring. We conducted a 3D k-Wave simulation using a 5x5 sensor array coupled to a physical coding mask, performing B-mode and power Doppler imaging on a 3D carotid artery flow model. An approximately three times smaller lateral PSF was achieved at the cost of increased background clutter level and slightly increased axial PSF. A better definition of the vessel border and finer flow speckle were observed in power Doppler imaging. Our results suggest that 3D compressive imaging using a very low sensor count of 25 with spatial coding mask has the potential to monitor 3D carotid artery flow. ...
Conference paper (2022) - Yuyang Hu, Michael Brown, Didem Doğan, Geert Leus, Pieter Kruizinga, Antonius F.W. Van Der Steen, Johannes G. Bosch
We intend to develop an ultrasound compressive imaging device to perform carotid artery (CA) function and flow monitoring/imaging by using just a few single element transducers equipped with spatial coding masks. The spatially unique impulse responses can be exploited in compressive reconstructions. To explore the potential of different configurations, in this study we emulated such a device using a linear array system. We combined its elements with individual digital delays into a small number of groups. The results suggest our spatial coding mask approach based on reconstructions regularized with a least squares method has potential for CA monitoring with only 10 to 12 sensors. ...
Conference paper (2021) - Didem Doğan , Pieter Kruizinga, Johannes G. Bosch, Geert Leus
Ultrasound imaging of the vasculature has major significance for the detection of cardiovascular diseases and cancer. However, limited spatial resolution or long acquisition times of existing techniques limit the visualization of the microvascular structures. Enforcing sparsity in the underlying vasculature as well as exploiting statistical independence between voxels have become prominent for fast super-resolution imaging. However, such a statistical independence may not be valid for all voxels and may hence lead to a distorted signal model. Here we present an image reconstruction method that exploits the sparsity of the vasculature data without distorting the original signal model. We employ a multiple measurement vector (MMV) model to enforce the joint sparsity over the images at different time instants. To reduce the computational complexity of obtaining the solution, the ℓ1-SVD method is applied to the MMV model. We demonstrate that our method improves spatial resolution and provides a clear separation between blood vessels. Although our method is slightly slower than existing approaches, it outperforms them in terms of image reconstruction quality. ...