In recent years, the use of Software Defined Networking (SDN) has increased due to various network management requirements. Using SDN in computer network applications has brought several benefits to users, including lower operational costs, better hardware management, flexibility, and centralized network deployment. On the other hand, the Internet of Things (IoT) is another rapidly growing technology. Distributed and dynamic infrastructures are two critical characteristics of IoT. These characteristics lead to some challenges while using SDN in IoT in terms of security and privacy. In this paper, we address security and privacy issues and solutions for SDN-based IoT systems. We analyze the techniques used for defense in previous works to achieve an acceptable level of security and privacy protection in SDN-based IoT systems. In the data plane, SDN-based IoT papers have considered hashing and encryption techniques, in the control plane, certificate authority and access control have been analyzed, and in the application plane, attack detection, and authentication have been discussed. We also provide a statistical analysis of the existing work. This analysis shows that researchers have focused on certain areas more than others in recent years. The final analysis also highlights issues that previous researchers have ignored.