Aim Connectivity is a key determinant of coral reef resilience. However, connectivity models rarely account for deep or submerged reefs, despite their widespread occurrence in many coral reef provinces. Here, we model coral larval connectivity among submerged and near-sea-surface (NSS) reefs, investigate differences in dispersal potential for coral larvae from these differing reef morphologies and estimate the potential for deeper reef habitats (> 10 m) to provide a source of larvae to shallower reef habitats (< 10 m). Location Great Barrier Reef, Australia. Methods We used two newly developed, high-resolution models to identify the location and spatial extent of submerged and NSS reefs and to simulate oceanographic currents (‘SLIM’) affecting larval dispersal. Dispersal patterns for five depth-generalist coral species with differing life histories and dispersal potential were modelled using an individual-based model (IBM). Results Near-sea-surface reefs were the largest source of larvae successfully settling, but submerged reefs exported a greater proportion of larvae per unit area to other reefs. Larvae originating from submerged reefs also dispersed greater distances. Recruits on shallow-water reef habitats primarily originated from other shallow areas, but two-way connectivity did occur between deep and shallow habitats. Empirical data indicate that long-term coral cover has declined most steeply on the shallow habitats predicted by our model to be highly dependent on other shallow habitats for recruits. Main conclusions Submerged reefs may contribute significantly to larval production and should therefore be considered in connectivity analyses. The hydrodynamic environment on submerged reefs results in larvae dispersing greater distances, potentially increasing their importance as source reefs following disturbances. Deep reef habitats are generally less exposed to disturbances and could therefore constitute an important larval source to some shallow habitats following disturbances. Given the importance of connectivity to coral reef resilience, greater attention should be afforded to identifying and protecting submerged reefs and other deeper habitats.@en

The 2015/16 ENSO event increased the temperature of waters surrounding northeast Australia to above 30 °C, with large patches of water reaching 32 °C, for over two months, which led to severe bleaching of corals of the Northern Great Barrier Reef (NGBR). This study provides evidence gained from remote-sensing data, oceanographic data and oceanographic modeling, that three factors caused this excessive heating, namely: 1) the shutdown of the North Queensland Coastal Current, which would otherwise have flushed and cooled the Northern Coral Sea and the NGBR through tidal mixing 2) the advection of warm (&#x003E;30 °C) water from the Gulf of Carpentaria eastward through Torres Strait and then southward over the NGBR continental shelf, and 3) presumably local solar heating. The eastward flux of this warm water through Torres Strait was driven by a mean sea level difference on either side of the strait that in turn was controlled by the wind, which also generated the southward advection of this warm water onto the NGBR shelf. On the NGBR shelf, the residence time of this warm water was longer inshore than offshore, and this may explain the observed cross-shelf gradient of coral bleaching intensity. The fate of the Great Barrier Reef is thus controlled by the oceanography of surrounding seas.@en

Transport timescales (TTS), namely residence time and exposure time, were computed for adjacent shallow meso-tidal tropical estuarines system using the Lagrangian model D-Waq Part coupled with the hydrodynamic model Delft3D-Flow, and the Constituent-oriented Age and Residence time Theory, CART. The main results are threefold: (a) The TTS differs more between releases at high or low tide than between those at spring and neap tides. The exposure time was also calculated and found to be larger than the residence time by a few days. (b) The exposure and residence times were used to evaluate the return coefficient (r) for different scenarios. As with residence and exposure times, the return coefficient was found to differ more between releases at high or low tide than between those at spring and neap tides. (c) For the Caravelas Estuary, where the river inflow was low (~4 m3 s-1), the residence time was found to be much larger than for the Peruípe Estuary, where the river discharge was greater and nearly constant during the sampling period (~20 m3 s-1). These results shows the importance of advection in decreasing TTS in the Peruípe Estuary compared to the Caravelas Estuary. The influence of the advection and dispersion agrees with previous simple estimates obtained using the newly modified Land Ocean Interaction Coastal Zone (LOICZ) model by Andutta et al. (2014).@en