The ability to physically move qubits within a register allows the design of hardware-specific error correction codes, which can achieve fault tolerance while respecting other constraints. In particular, recent advancements have demonstrated the shuttling of electron and hole spin qubits through a quantum dot array with high fidelity. It is therefore timely to explore error correction architectures consisting merely of two parallel quantum dot arrays, an experimentally validated architecture compatible with classical wiring and control constraints. Upon such an architecture, we develop a suite of heuristic methods for compiling any Calderbank-Shor-Steane (CSS) error-correcting code's syndrome-extraction circuit to run with a reduced number of shuttling operations. We demonstrate how column-regular qLDPC codes can be compiled in a provably minimal number of shuttles that is exactly equal to the column weight of the code when Shor-style syndrome extraction is used. We provide tables stating the number of required shuttles for many contemporary codes of interest. In addition, we provide a proof of the NP hardness of minimizing the number of shuttle operations for general codes, even when using Shor-syndrome extraction. We also discuss how one could get around this by placing blanks in the ancilla array to achieve minimal shuttles with Shor-syndrome extraction on any CSS code, at the cost of longer ancilla arrays.

Noisy hardware forms one of the main hurdles to the realization of a near-term quantum internet. Distillation protocols allows one to overcome this noise at the cost of an increased overhead. We consider here an experimentally relevant class of distillation protocols, which distill <italic>n</italic> to <italic>k</italic> end-to-end entangled pairs using bilocal Clifford operations, a single round of communication and a possible final local operation depending on the observed measurement outcomes. In the case of permutationally invariant depolarizing noise on the input states, we find a correspondence between these distillation protocols and graph codes. We leverage this correspondence to find provably optimal distillation protocols in this class for several tasks important for the quantum internet. This correspondence allows us to investigate use cases for so-called non-trivial measurement syndromes. Furthermore, we detail a recipe to construct the circuit used for the distillation protocol given a graph code. We use this to find circuits of short depth and small number of two-qubit gates. Additionally, we develop a black-box circuit optimization algorithm, and find that both approaches yield comparable circuits. Finally, we investigate the teleportation of encoded states and find protocols which jointly improve the rate and fidelities with respect to prior art.