AF
A. Farooq
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Quantifying complementarity between different cfDNA features
Detection of cancer using blood
Bachelor thesis
(2024)
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A. Farooq, M.J.T. Reinders, S. Makrodimitris, I.B. Pronk, D.M. Hazelaar, J.A. Pouwelse
Recent research has indicated attributes of cell-free DNA (cfDNA) called fragmentomics
as a promising method for late stage cancer detection in a non-invasive manner. The pri-
mary objective of this research is to uncover hidden patterns and interactions that could
enhance the accuracy and sensitivity of blood-based cancer diagnostics. This study explores
the complementarity between three fragmentomics features; fragment length distribution,
and nucleotide fragment end sequence diversity and nucleosome positioning for four dif-
ferent sample groups; breast cancer, colorectal cancer, lung cancer and healthy controls.
Various machine learning techniques such as linear regression were employed to quantify
any complementary relationships between the features ...
as a promising method for late stage cancer detection in a non-invasive manner. The pri-
mary objective of this research is to uncover hidden patterns and interactions that could
enhance the accuracy and sensitivity of blood-based cancer diagnostics. This study explores
the complementarity between three fragmentomics features; fragment length distribution,
and nucleotide fragment end sequence diversity and nucleosome positioning for four dif-
ferent sample groups; breast cancer, colorectal cancer, lung cancer and healthy controls.
Various machine learning techniques such as linear regression were employed to quantify
any complementary relationships between the features ...
Recent research has indicated attributes of cell-free DNA (cfDNA) called fragmentomics
as a promising method for late stage cancer detection in a non-invasive manner. The pri-
mary objective of this research is to uncover hidden patterns and interactions that could
enhance the accuracy and sensitivity of blood-based cancer diagnostics. This study explores
the complementarity between three fragmentomics features; fragment length distribution,
and nucleotide fragment end sequence diversity and nucleosome positioning for four dif-
ferent sample groups; breast cancer, colorectal cancer, lung cancer and healthy controls.
Various machine learning techniques such as linear regression were employed to quantify
any complementary relationships between the features
as a promising method for late stage cancer detection in a non-invasive manner. The pri-
mary objective of this research is to uncover hidden patterns and interactions that could
enhance the accuracy and sensitivity of blood-based cancer diagnostics. This study explores
the complementarity between three fragmentomics features; fragment length distribution,
and nucleotide fragment end sequence diversity and nucleosome positioning for four dif-
ferent sample groups; breast cancer, colorectal cancer, lung cancer and healthy controls.
Various machine learning techniques such as linear regression were employed to quantify
any complementary relationships between the features