W.K. Spoelstra
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6 records found
1
Part I presents novel experimental insights into the dynamic mechanisms that regulate epithelial homeostasis and barrier function. A key feature of the intestinal epithelium is its ability to maintain constant cell density and integrity through continuous stem cell proliferation and extrusion of cells. In Chapter 2, we propose a new model for epithelial cell extrusion. Our findings reveal that epithelial cells engage in a constant mechanical "tug-of-war", exerting dynamic pulling forces on their neighbors. This mechanical competition allows cells to assess the tension they generate relative to adjacent cells. Those that produce insufficient tension are more likely to be extruded. This mechanism selectively retains mechanically robust cells, thereby enhancing epithelial integrity and preserving barrier function. Chapter 3 explores how differentiation is regulated within the intestinal epithelium. We demonstrate that once stem cells lose access to Wnt ligands, they initiate a differentiation timer. IfWnt signaling is restored before the timer elapses, cells can reset the process and retain their stem cell identity. If not, they commit to a differentiated fate. These findings suggest that differentiation is a spatially dependent, reversible process rather than a strictly linear one. In Chapter 4, we investigate the differentiation of the rare and only recently identified BEST4/CA7+ cells. While absent in mouse intestinal epithelium, these cells were originally discovered in humans and have since been found in other animals. Using human intestinal organoids and transcriptional fluorescent reporters, we tracked the differentiation of this cell type. Our data show that BEST4/CA7+ cells and mucus producing (goblet) cells are mutually dependent: Goblet cells direct the differentiation of neighboring cells toward the BEST4/CA7+ lineage. In turn, BEST4/CA7+ cells are critical for the long-term survival of goblet cells.
Part II introduces new tools and protocols for studying dynamic processes in the intestinal epithelium. Chapter 5 presents a machine learning-based algorithm for the in silico labeling of nuclei and membranes in 3D organoids. This approach conserves fluorescent channels for other reporters and enables high-resolution, single cell tracking with minimal phototoxicity. Finally, Chapter 6 details protocols for long-term live-cell imaging combined with in-situ fixation. These methods allow for the real-time tracking of organoid development with experimental perturbations and identification of cell types at the endpoint. ...
Part I presents novel experimental insights into the dynamic mechanisms that regulate epithelial homeostasis and barrier function. A key feature of the intestinal epithelium is its ability to maintain constant cell density and integrity through continuous stem cell proliferation and extrusion of cells. In Chapter 2, we propose a new model for epithelial cell extrusion. Our findings reveal that epithelial cells engage in a constant mechanical "tug-of-war", exerting dynamic pulling forces on their neighbors. This mechanical competition allows cells to assess the tension they generate relative to adjacent cells. Those that produce insufficient tension are more likely to be extruded. This mechanism selectively retains mechanically robust cells, thereby enhancing epithelial integrity and preserving barrier function. Chapter 3 explores how differentiation is regulated within the intestinal epithelium. We demonstrate that once stem cells lose access to Wnt ligands, they initiate a differentiation timer. IfWnt signaling is restored before the timer elapses, cells can reset the process and retain their stem cell identity. If not, they commit to a differentiated fate. These findings suggest that differentiation is a spatially dependent, reversible process rather than a strictly linear one. In Chapter 4, we investigate the differentiation of the rare and only recently identified BEST4/CA7+ cells. While absent in mouse intestinal epithelium, these cells were originally discovered in humans and have since been found in other animals. Using human intestinal organoids and transcriptional fluorescent reporters, we tracked the differentiation of this cell type. Our data show that BEST4/CA7+ cells and mucus producing (goblet) cells are mutually dependent: Goblet cells direct the differentiation of neighboring cells toward the BEST4/CA7+ lineage. In turn, BEST4/CA7+ cells are critical for the long-term survival of goblet cells.
Part II introduces new tools and protocols for studying dynamic processes in the intestinal epithelium. Chapter 5 presents a machine learning-based algorithm for the in silico labeling of nuclei and membranes in 3D organoids. This approach conserves fluorescent channels for other reporters and enables high-resolution, single cell tracking with minimal phototoxicity. Finally, Chapter 6 details protocols for long-term live-cell imaging combined with in-situ fixation. These methods allow for the real-time tracking of organoid development with experimental perturbations and identification of cell types at the endpoint.
Cell extrusion is essential for homeostatic self-renewal of the intestinal epithelium. extrusion is thought to be triggered by crowding-induced compression of cells at the intestinal villus tip. In this study, we found instead that a local “tug-of-war” competition between contractile cells regulated extrusion in the intestinal epithelium. We combined quantitative live microscopy, optogenetic induction of tissue tension, genetic perturbation of myosin II activity, and local disruption of the basal cortex in mouse intestines and intestinal organoids. these approaches revealed that a dynamic actomyosin network generates tension throughout the intestinal villi, including the villus tip region. mechanically weak cells unable to maintain this tension underwent extrusion. thus, epithelial barrier integrity depends on intercellular mechanics.
Coacervates are polymer-rich droplets that form through liquid-liquid phase separation in polymer solutions. Liquid-liquid phase separation and coacervation have recently been shown to play an important role in the organization of biological systems. Such systems are highly dynamic and under continuous influence of enzymatic and chemical processes. However, it is still unclear how enzymatic and chemical reactions affect the coacervation process. Here, we present and characterize a system of enzymatically active coacervates containing spermine, RNA, free nucleotides, and the template independent RNA (de)polymerase PNPase. We find that these RNA coacervates display transient nonspherical shapes, and we systematically study how PNPase concentration, UDP concentration, and temperature affect coacervate morphology. Furthermore, we show that PNPase localizes predominantly into the coacervate phase and that its depolymerization activity in high-phosphate buffer causes coacervate degradation. Our observations of nonspherical coacervate shapes may have broader implications for the relationship between (bio)chemical activity and coacervate biology.
Liquid-liquid phase separation (LLPS), especially coacervation, plays a crucial role in cell biology, as it forms numerous membraneless organelles in cells. Coacervates play an indispensable role in regulating intracellular biochemistry, and their dysfunction is associated with several diseases. Understanding of the LLPS dynamics would greatly benefit from controlled in vitro assays that mimic cells. Here, we use a microfluidics-based methodology to form coacervates inside cell-sized (~10 µm) liposomes, allowing control over the dynamics. Protein-pore-mediated permeation of small molecules into liposomes triggers LLPS passively or via active mechanisms like enzymatic polymerization of nucleic acids. We demonstrate sequestration of proteins (FtsZ) and supramolecular assemblies (lipid vesicles), as well as the possibility to host metabolic reactions (β-galactosidase activity) inside coacervates. This coacervate-in-liposome platform provides a versatile tool to understand intracellular phase behavior, and these hybrid systems will allow engineering complex pathways to reconstitute cellular functions and facilitate bottom-up creation of synthetic cells.
Liposomes, self-assembled vesicles with a lipid-bilayer boundary similar to cell membranes, are extensively used in both fundamental and applied sciences. Manipulation of their physical properties, such as growth and division, may significantly expand their use as model systems in cellular and synthetic biology. Several approaches have been explored to controllably divide liposomes, such as shape transformation through temperature cycling, incorporation of additional lipids, and the encapsulation of protein division machinery. However, so far, these methods lacked control, exhibited low efficiency, and yielded asymmetric division in terms of volume or lipid composition. Here, we present a microfluidics-based strategy to realize mechanical division of cell-sized (∼6 μm) liposomes. We use octanol-assisted liposome assembly (OLA) to produce liposomes on chip, which are subsequently flowed against the sharp edge of a wedge-shaped splitter. Upon encountering such a Y-shaped bifurcation, the liposomes are deformed and, remarkably, are able to divide into two stable daughter liposomes in just a few milliseconds. The probability of successful division is found to critically depend on the surface area-to-volume ratio of the mother liposome, which can be tuned through osmotic pressure, and to strongly correlate to the mother liposome size for given microchannel dimensions. The division process is highly symmetric (∼3% size variation between the daughter liposomes) and is accompanied by a low leakage. This mechanical division of liposomes may constitute a valuable step to establish a growth-division cycle of synthetic cells.
Recently, the bottom-up assembly of a synthetic cell has emerged as a daring novel approach that can be expected to have major impact in generating fundamental insight in the organization and function of actual biological cells, as well as in stimulating a broad range of applications from drug delivery systems to chemical nanofactories. A crucial feature of any such synthetic cell is the architectural scaffold that defines its identity, compartmentalizes its inner content, and serves as a protective and selective barrier against its environment. Here we review a variety of potential scaffolds for building a synthetic cell. We categorize them as membranous structures (liposomes, fatty acid vesicles, polymersomes), emulsions (droplets and colloidosomes), and membrane-less coacervates. We discuss recent advances for each of them, and explore their salient features as candidates for designing synthetic cells.