Outcome prediction for endovascular therapy

Multimodal deep learning for acute ischemic events in the arteria cerebri media

Master Thesis (2022)
Author(s)

Frank te Nijenhuis (TU Delft - Electrical Engineering, Mathematics and Computer Science)

Contributor(s)

J.C. Gemert – Graduation committee member (TU Delft - Pattern Recognition and Bioinformatics)

X. Zhang – Mentor (TU Delft - Pattern Recognition and Bioinformatics)

T. Höllt – Graduation committee member (TU Delft - Computer Graphics and Visualisation)

Theo Van Walsum – Mentor (Erasmus MC)

Ruisheng Su – Mentor (Erasmus MC)

Faculty
Electrical Engineering, Mathematics and Computer Science
Copyright
© 2022 Frank te Nijenhuis
More Info
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Publication Year
2022
Language
English
Copyright
© 2022 Frank te Nijenhuis
Graduation Date
30-11-2022
Awarding Institution
Delft University of Technology
Programme
['Computer Science']
Related content

Gitlab repository containing code for the project

https://gitlab.com/radiology/igit/msc-projects/frank-te-nijenhuis/thesis-new-version
Faculty
Electrical Engineering, Mathematics and Computer Science
Reuse Rights

Other than for strictly personal use, it is not permitted to download, forward or distribute the text or part of it, without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license such as Creative Commons.

Abstract

The efficacy of endovascular therapy in large vessel occlusion (LVO) of the anterior circulation is dependent to a high degree on the selection of patients who are likely to benefit from this procedure. To this end, functional outcome prediction based on clinical parameters is an active area of research. In the preoperative screening of LVO patients, CT-Angiography (CTA) imaging is commonly acquired. We compare the functional outcome prediction performance of multiple deep learning based classifiers with multiple conventional methods, including the clinically validated MR PREDICTS decision tool. Using a dataset composed of 1929 preprocedural CTA images combined with clinical data, we compare a clinical baseline model with an imaging based pipeline and a combined pipeline. For the imaging model backbone we train various state-of-the-art architectures (Med3D, Vision Transformer, Voxel Transformer). These models are used to predict dichotomized modified Rankin Scale score 90 days after mechanical thrombectomy. Binary classifier outcomes are quantified using Area-Under the receiver operating characteristic Curve (AUC). The activation maps of the best performing image based model are further investigated using the GradCAM++ posthoc visualization method. Combining clinical features with information extracted from CTA images does not significantly improve the performance of functional outcome prediction methods compared to the baseline model. The information extracted from the images does not seem to
be complementary to the clinical features. This multimodal technique can however replace radiologically derived biomarkers, as its performance is non-inferior.

Files

Thesis.pdf
(pdf | 8.7 Mb)
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