Evaporation control of femtoliter droplets to obtain less than 500 nm vitreous ice for high resolution CryoEM

Master Thesis (2024)
Author(s)

J.J. Mens (TU Delft - Mechanical Engineering)

Contributor(s)

MK Ghatkesar – Mentor (TU Delft - Micro and Nano Engineering)

Faculty
Mechanical Engineering
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Publication Year
2024
Language
English
Graduation Date
21-08-2024
Awarding Institution
Delft University of Technology
Programme
['Mechanical Engineering | Mechatronic System Design (MSD)']
Faculty
Mechanical Engineering
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Abstract

Subcellular biopsy (SCB) using atomic force microscopy (AFM) with a microfluidic cantilever enables the extraction of biological samples from living cells. Traditional cryo-electron microscopy (cryo-EM) sample preparation methods are unsuitable for the small volumes from SCB. This study presents a novel method to prepare cryo-EM samples directly from SCB samples, integrating dispensing, thickness measurement, and local temperature control to minimize evaporation. The method uses a microfluidic AFM cantilever for dispensing, a Mach-Zehnder interferometer for real-time thickness measurement, and plunge freezing for vitrification. The system successfully demonstrated dispensing picoliter droplets, with potential for femtoliter volumes. The temperature-controlled grid holder reduced evaporation rates, allowing sufficient time for real-time thickness measurement. The system has demonstrated the required transition speed and plunge velocity. Initial cryo-EM thickness measurements demonstrate the method's potential. In conclusion, a novel system for subcellular biopsy sample preparation for cryo-EM was designed, fabricated, and tested. It maintains picoliter sample volumes on a temperature-controlled EM grid, enabling real-time thickness measurement and immediate plunge freezing.

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