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Atypical Glycolysis in Clostridium thermocellum

Zhou, J. (author), Olson, D.G. (author), Argyros, D.A. (author), Deng, Y. (author), Van Gulik, W.M. (author), Van Dijken, J.P. (author), Lynd, L.R. (author)

Cofactor specificities of glycolytic enzymes in Clostridium thermocellum were studied with cellobiose-grown cells from batch cultures. Intracellular glucose was phosphorylated by glucokinase using GTP rather than ATP. Although phosphofructokinase typically uses ATP as a phosphoryl donor, we found only pyrophosphate (PPi)-linked activity....

journal article 2013

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Berezinskii-Kosterlitz-Thouless-like percolation transitions in the two-dimensional XY model

Hu, H. (author), Deng, Y. (author), Blöte, H.W.J. (author)

journal article 2011

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Single-cluster dynamics for the random-cluster model

Deng, Y. (author), Qian, X. (author), Blöte, H.W.J. (author)

We formulate a single-cluster Monte Carlo algorithm for the simulation of the random-cluster model. This algorithm is a generalization of the Wolff single-cluster method for the q-state Potts model to noninteger values q>1. Its results for static quantities are in a satisfactory agreement with those of the existing Swendsen-Wang-Chayes-Machta ...

journal article 2009

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Percolation transitions in two dimensions

Feng, X. (author), Deng, Y. (author), Blöte, H.W.J. (author)

We investigate bond- and site-percolation models on several two-dimensional lattices numerically, by means of transfer-matrix calculations and Monte Carlo simulations. The lattices include the square, triangular, honeycomb kagome, and diced lattices with nearest-neighbor bonds, and the square lattice with nearest- and next-nearest-neighbor bonds...

journal article 2008

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Geometric properties of two-dimensional O(n) loop configurations

Ding, C. (author), Deng, Y. (author), Guo, W. (author), Qian, X. (author), Blöte, H.W.J. (author)

journal article 2007

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Cluster simulations of loop models on two-dimensional lattices

Deng, Y. (author), Garoni, T.M. (author), Guo, W. (author), Blöte, H.W.J. (author), Sokal, A.D. (author)

journal article 2007

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Unified approach for cluster variation method calculations of phase diagrams in fcc substitutional alloys with interstitial species

Nanu, D.E. (author), Deng, Y. (author), Böttger, A.J. (author)

journal article 2006

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Simulation algorithms for the random-cluster model

Qian, X. (author), Deng, Y. (author), Blöte, H.W.J. (author)

journal article 2005

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Dilute Potts model in two dimensions

Qian, X. (author), Deng, Y. (author), Blöte, H.W.J. (author)

journal article 2005

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Constrained tricritical phenomena in two dimensions

Deng, Y. (author), Heringa, J.R. (author), Blöte, H.W.J. (author)

journal article 2005

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Monte Carlo study of the site-percolation model in two and three dimensions

Deng, Y. (author), Blöte, H.W.J. (author)

journal article 2005

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Edge phase transitions of the tricritical Potts model in two dimensions

Deng, Y. (author), Blöte, W.H.J. (author)

journal article 2005

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Surface critical phenomena in three-dimensional percolation

Deng, Y. (author), Blöte, H.W.J. (author)

journal article 2005

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Percolation between vacancies in the two-dimensional Blume-Capel model

Deng, Y. (author), Guo, W. (author), Blöte, J.W. (author)

journal article 2005

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Surface and bulk transitions in three-dimensional O(n) models

Deng, Y. (author), Blöte, H.W.J. (author), Nightingale, M.P. (author)

journal article 2005

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Percolation in one of q colors near criticality

Qian, X. (author), Deng, Y. (author), Blöte, H.W.J. (author)

journal article 2005

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Conformal symmetries and constrained critical phenomena

Deng, Y. (author)

doctoral thesis 2004

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Red-bond exponents of the critical and the tricritical Ising model in three dimensions

Deng, Y. (author), Blöte, H.W.J. (author)

journal article 2004

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Geometric properties of two-dimensional critical and tricritical Potts models

Deng, Y. (author), Blöte, H.W.J. (author), Nienhuis, B. (author)

journal article 2004

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Spontaneous edge order and geometric aspects of two-dimensional Potts models

Deng, Y. (author), Blöte, H.W.J. (author)

journal article 2004