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B. Spitzbarth

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Cdc42, a Rho-family GTPase, plays a pivotal role in establishing polarity in Saccharomyces cerevisiae by accumulating on the membrane at the site of bud emergence. Cdc42’s ability to bind to membranes, mediated by prenylation, is essential for its function. Prenylation involves either the post-translational addition of a 15-carbon farnesyl group or a 20-carbon geranylgeranyl group to Cdc42’s C-terminus. One of the major challenges in studying the physical and chemical interactions of Cdc42 at the polarity spot in vitro is obtaining prenylated Cdc42. Here, we present a streamlined, sortase A-based approach to farnesylate Cdc42 in vitro. This method uses Escherichia coli-expressed Cdc42 with a sortase A recognition motif, facilitating efficient farnesylation and purification using a size exclusion-based strategy. The farnesylated Cdc42 retains functionality, as evidenced by membrane binding and by its GEF-regulatory GTPase activity, making it suitable for further biophysical and biochemical investigations. ...
Ultrafast spectroscopy can be used to study dynamic processes on femtosecond to nanosecond timescales, but is typically used for photoinduced processes. Several materials can induce ultrafast temperature rises upon absorption of femtosecond laser pulses, in principle allowing to study thermally activated processes, such as (catalytic) reactions, phase transitions, and conformational changes. Gold–silica core–shell nanoparticles are particularly interesting for this, as they can be used in a wide range of media and are chemically inert. Here we computationally model the temporal and spatial temperature profiles of gold nanoparticles with and without silica shell in liquid and gas media. Fast rises in temperature within tens of picoseconds are always observed. This is fast enough to study many of the aforementioned processes. We also validate our results experimentally using a poly(urethane-urea) exhibiting a temperature-dependent hydrogen bonding network, which shows local temperatures above 90 °C are reached on this timescale. Moreover, this experiment shows the hydrogen bond breaking in such polymers occurs within tens of picoseconds. ...
Dynamic covalent (DCv) ureas are highly diverse chemical moieties and have become one of the most used motifs in self-healing materials and beyond. This review summarizes the historical development, properties, and applications of DCv ureas in different fields of organic chemistry, materials chemistry, and biomedical applications and provides guidance on the design of different DCv ureas depending on stability and dynamicity requirements. ...
Doctoral thesis (2024) - B. Spitzbarth
Nature has inspired countless researchers in their quest to understand the phenomena we observe and utilise their findings to develop new technologies. This becomes especially apparent in systems chemistry, which heavily draws inspiration from natural systems in its pursuit for the understanding and development of chemical reaction networks (CRNs) with interesting properties. Today, CRNs play a big role in many sensors, amplification systems, transient materials, and more. Despite major advances in the field of CRNs, there is still a need for additional robust, versatile chemistries to allow for more diverse applications, both within systems chemistry and in other fields beyond, such as material science. This thesis aims to explore new applications of Dynamic Covalent Chemistry (DCvC)—typically utilised to make self-healing materials—in CRNs to allow for new applications drawing from the versatile chemistry used in DCv systems. ...
Journal article (2023) - B. Spitzbarth, R. Eelkema
Over the last few decades, the study of more complex, chemical systems closer to those found in nature, and the interactions within those systems, has grown immensely. Despite great efforts, the need for new, versatile, and robust chemistry to apply in CRNs remains. In this Feature Article, we give a brief overview over previous developments in the field of systems chemistry and how β′-substituted Michael acceptors (MAs) can be a great addition to the systems chemist's toolbox. We illustrate their versatility by showcasing a range of examples of applying β′-substituted MAs in CRNs, both as chemical signals and as substrates, to open up the path to many applications ranging from responsive materials, to pathway control in CRNs, drug delivery, analyte detection, and beyond. ...
Journal article (2023) - Benjamin Spitzbarth, Rienk Eelkema
Dynamic covalent (DCv) ureas have been used abundantly to design self-healing materials. We demonstrate that apart from self-healing materials, the species present in the equilibrium of DCv ureas can be employed as responsive organocatalysts. Easily controllable stimuli like heat or addition of water shift the equilibrium towards isocyanate and free base which can function as an in situ released reagent. We demonstrate this application of DCv ureas with two examples. Firstly, we use the liberated base to catalytically activate a latent organocatalyst for acylhydrazone formation. Secondly, this base can be employed in an equimolar manner to trigger the release of nitrile-N-oxides from chlorooximes, which react with acrylate-terminated polymers to form an isoxazoline polymer gel. ...
Journal article (2023) - Anastasiia Sharko, Benjamin Spitzbarth, Thomas M. Hermans, Rienk Eelkema
Shunts, alternative pathways in chemical reaction networks (CRNs), are ubiquitous in nature, enabling adaptability to external and internal stimuli. We introduce a CRN in which the recovery of Michael-accepting species is driven by oxidation chemistry. Using weak oxidants can enable access to two shunts within this CRN with different kinetics and a reduced number of side reactions compared to the main cycle that is driven by strong oxidants. Furthermore, we introduce a strategy to recycle one of the main products under flow conditions to partially reverse the CRN and control product speciation throughout time. These findings introduce new levels of control over artificial CRNs, driven by redox chemistry, narrowing the gap between synthetic and natural systems. ...