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M.A. Verweij

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The Influence of Funding Policy on Freedom of Research

In today’s knowledge economies, a significant part of academic research is funded by national research funding institutes. Research funding institutes commonly design national research agendas in an attempt to define the optimal course of research and implement them using funding strategies where some funding is locked behind thematic conditions. By enforcing research agendas, however, research funding institutions interfere with researchers’ academic freedom. This research studies the relationship between researchers’ freedom and research agendas through Amartya Sen’s freedom of choice concept and Patrick Suppes’ measure of freedom of choice. By focusing on the relationship between choices in research direction and thematic grants, this study examines how research agendas of the Dutch Research Council (NWO) influence the freedom of choice of researchers. This study also investigates the philosophical conceptions of academic freedom of Immanuel Kant, Wilhelm von Humboldt, and John Stuart Mill and compares them with freedom of choice to determine the compatibility of research agendas. This research applies the measure of freedom of choice on NWO’s own funded projects to determine how NWO supports researchers’ freedom of choice. The findings confirm NWO’s own documentation regarding their strategies for increasing researcher freedom. Additionally, the research highlights difficulties and potential improvements in the application of freedom of choice and its measure. Based on freedom of choice and academic freedom, this study derives and studies policy strategies for increasing researchers’ freedom and allowing for the design of research agendas with academic freedom in mind. Ultimately, this study presents a theoretical approach to policy regarding research agendas and underscores the importance of research freedom and academic freedom in NWO’s ability to create the right research environments for impactful and innovative academic research. ...
Journal article (2023) - Boudewine W. Ossenkoppele, Ben Luijten, Deep Bera, Nico de Jong, Martin D. Verweij, Ruud J.G. van Sloun
There is an increased desire for miniature ultrasound probes with small apertures to provide volumetric images at high frame rates for in-body applications. Satisfying these increased requirements makes simultaneous achievement of a good lateral resolution a challenge. As micro-beamforming is often employed to reduce data rate and cable count to acceptable levels, receive processing methods that try to improve spatial resolution will have to compensate the introduced reduction in focusing. Existing beamformers do not realize sufficient improvement and/or have a computational cost that prohibits their use. Here we propose the use of adaptive beamforming by deep learning (ABLE) in combination with training targets generated by a large aperture array, which inherently has better lateral resolution. In addition, we modify ABLE to extend its receptive field across multiple voxels. We illustrate that this method improves lateral resolution both quantitatively and qualitatively, such that image quality is improved compared with that achieved by existing delay-and-sum, coherence factor, filtered-delay-multiplication-and-sum and Eigen-based minimum variance beamformers. We found that only in silica data are required to train the network, making the method easily implementable in practice. ...
Journal article (2023) - Hongchen Li, Xiufeng Li, Gonzalo Collado-Lara, Kirby R. Lattwein, Frits Mastik, Robert Beurskens, Antonius F.W. van der Steen, Martin D. Verweij, Nico de Jong, Klazina Kooiman
Ultrasound contrast-mediated medical imaging and therapy both rely on the dynamics of micron- and nanometer-sized ultrasound cavitation nuclei, such as phospholipid-coated microbubbles and phase-change droplets. Ultrasound cavitation nuclei respond non-linearly to ultrasound on a nanosecond time scale that necessitates the use of ultra-high-speed imaging to fully visualize these dynamics in detail. In this study, we developed an ultra-high-speed optical imaging system that can record up to 20 million frames per second (Mfps) by coupling two small-sized, commercially available, 10-Mfps cameras. The timing and reliability of the interleaved cameras needed to achieve 20 Mfps was validated using two synchronized light-emitting diode strobe lights. Once verified, ultrasound-activated microbubble responses were recorded and analyzed. A unique characteristic of this coupled system is its ability to be reconfigured to provide orthogonal observations at 10 Mfps. Acoustic droplet vaporization was imaged from two orthogonal views, by which the 3-D dynamics of the phase transition could be visualized. This optical imaging system provides the temporal resolution and experimental flexibility needed to further elucidate the dynamics of ultrasound cavitation nuclei to potentiate the clinical translation of ultrasound-mediated imaging and therapy developments. ...
Journal article (2023) - Reza Pakdaman Zangabad, Hongchen Li, Joop J.P. Kouijzer, Simone A.G. Langeveld, Ines Beekers, Martin Verweij, Nico De Jong, Klazina Kooiman
Understanding and controlling the ultrasound contrast agent (UCA)'s response to an applied ultrasound pressure field are crucial when investigating ultrasound imaging sequences and therapeutic applications. The magnitude and frequency of the applied ultrasonic pressure waves affect the oscillatory response of the UCA. Therefore, it is important to have an ultrasound compatible and optically transparent chamber in which the acoustic response of the UCA can be studied. The aim of our study was to determine the in situ ultrasound pressure amplitude in the ibidi μ -slide I Luer channel, an optically transparent chamber suitable for cell culture, including culture under flow, for all microchannel heights (200, 400, 600, and 800 μm). First, the in situ pressure field in the 800- μm high channel was experimentally characterized using Brandaris 128 ultrahigh-speed camera recordings of microbubbles (MBs) and a subsequent iterative processing method, upon insonification at 2 MHz, 45° incident angle, and 50-kPa peak negative pressure (PNP). Control studies in another cell culture chamber, the CLINIcell, were compared with the obtained results. The pressure amplitude was -3.7 dB with respect to the pressure field without the ibidi μ -slide. Second, using finite-element analysis, we determined the in situ pressure amplitude in the ibidi with the 800- μm channel (33.1 kPa), which was comparable to the experimental value (34 kPa). The simulations were extended to the other ibidi channel heights (200, 400, and 600 μm) with either 35° or 45° incident angle, and at 1 and 2 MHz. The predicted in situ ultrasound pressure fields were between -8.7 and -1.1 dB of the incident pressure field depending on the listed configurations of ibidi slides with different channel heights, applied ultrasound frequencies, and incident angles. In conclusion, the determined ultrasound in situ pressures demonstrate the acoustic compatibility of the ibidi μ -slide I Luer for different channel heights, thereby showing its potential for studying the acoustic behavior of UCAs for imaging and therapy. ...