Analysing visual biases in coral imagery for bleaching detection

Master Thesis (2022)
Author(s)

J.J.C. Vlekke (TU Delft - Electrical Engineering, Mathematics and Computer Science)

Contributor(s)

Marcel J.T. Reinders – Mentor (TU Delft - Pattern Recognition and Bioinformatics)

Silvia-Laura Pintea – Graduation committee member (Leiden University Medical Center)

Faculty
Electrical Engineering, Mathematics and Computer Science
Copyright
© 2022 Jimmy Vlekke
More Info
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Publication Year
2022
Language
English
Copyright
© 2022 Jimmy Vlekke
Graduation Date
15-12-2022
Awarding Institution
Delft University of Technology
Programme
['Electrical Engineering | Bioelectronics']
Faculty
Electrical Engineering, Mathematics and Computer Science
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Abstract

Global warming causes coral bleaching which threatens the health and existence of coral reefs and therefore also the future of a lot of species, including human beings. Efforts to automate coral reef monitoring using annotated coral images to detect coral bleaching are hindered by the lack of a complete dataset that specifies the health and bleaching status of corals. We propose to combine publicly available data into a dataset and train a CNN for coral bleaching detection. This model performs surprisingly well. However, combining data from different sources gives rise to dataset biases which helps classifiers perform better and make them unreliable for unseen data. We try to detect such biases and document themsing several bias detection methods.

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