Global diversity of enterococci and description of 18 previously unknown species

SAFPred: Synteny-aware gene function prediction for bacteria using protein embeddings

Integrated omics of Saccharomyces cerevisiae CENPK2-1C reveals pleiotropic drug resistance and lipidomic adaptations to cannabidiol

Unveiling microbial biomarkers of ruminant methane emission through machine learning

Catch me if you can: capturing microbial community transformation by extracellular DNA using Hi-C sequencing

Simulated Design-Build-Test-Learn Cycles for Consistent Comparison of Machine Learning Methods in Metabolic Engineering

Effects of fir-wood biochar on CH4 oxidation rates and methanotrophs in landfill cover soils packed at three different proctor compaction levels

SHIP: identifying antimicrobial resistance gene transfer between plasmids

Pan-genome de Bruijn graph using the bidirectional FM-index

Genomes of four Streptomyces strains reveal insights into putative new species and pathogenicity of scab-causing organisms

Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations

“How sweet are your strawberries?”: Predicting sugariness using non-destructive and affordable hardware

Metagenomic profiling and transfer dynamics of antibiotic resistance determinants in a full-scale granular sludge wastewater treatment plant

Identification of HLA-E Binding Mycobacterium tuberculosis-Derived Epitopes through Improved Prediction Models

StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities

Metagenomic-based surveillance systems for antibiotic resistance in non-clinical settings

HAT: haplotype assembly tool using short and error-prone long reads

Explainable artificial intelligence in forensics: Realistic explanations for number of contributor predictions of DNA profiles

A comparative study of pan-genome methods for microbial organisms: Acinetobacter baumannii pan-genome reveals structural variation in antimicrobial resistance-carrying plasmids

Emergence of novel SARS-CoV-2 variants in the Netherlands