Wave breaking on the steep fore-reef slopes of shallow fringing reefs can be effective at dissipating incident sea-swell waves prior to reaching reef shorelines. However, wave setup and free infragravity waves generated during the sea-swell breaking process are often the largest contributors to wave-driven water levels (wave runup) at the shoreline. Laboratory flume experiments and a two-dimensional vertical phase-resolving nonhydrostatic wave-flow model, which includes a canopy model to predict drag forces generated by roughness elements, were used to investigate wave-driven water levels for along-shore uniform fringing reefs. In contrast to many previous studies, both the laboratory experiment and the numerical model account for the effects of large bottom roughness. The numerical model reproduced the observations of the wave transformation and runup over both smooth and rough reef profiles. The numerical model was then extended to quantify the influence of reef geometry and compared to simulations of plane beaches lacking a reef. For a fixed offshore forcing condition, the fore-reef slope controlled wave runup on reef-fronted beaches, whereas the beach slope controlled wave runup on plane beaches. As a result, the coastal protection utility of reefs is dependent on these slopes. For our examples, with a fore-reef slope of 1/5 and a 500 m prototype reef flat length, a beach slope of ∼1/30 marked the transition between the reef providing runup reduction for steeper beach slopes and enhancing wave runup for milder slopes. Roughness coverage, spacing, dimensions, and drag coefficient were investigated, with results indicating the greatest runup reductions were due to tall roughness elements on the reef flat.@en

Low-frequency (infragravity) wave dynamics on a fringing coral reef were investigated using the numerical model XBeach (Roelvink et al, 2009). First, the skill of the one-dimensional model was evaluated based on its predictions of short waves (0.04-0.2 Hz), infragravity waves (0.004-0.04 Hz) and water level measurements (tidal elevation and wave setup) obtained during a 2009 field study at Ningaloo Reef in Western Australia. The model calibration was sensitive to friction coefficients for short waves and current / infragravity bed friction, which were assumed independent in this model study. The infragravity waves were found to be generated primarily in the surf zone through the breakpoint generation mechanism rather than through offshore forcing. The infragravity waves were also strongly modulated over the reef by tidal depth variations, primarily due to the variability in frictional dissipation rates when the total water depth over the reef varied. The results revealed that short waves dominated bottom stresses on the forereef and near the reef crest; however, inside the lagoon, infragravity waves become increasingly dominant, accounting up to 50% of the combined bottom stresses.@en

A laboratory experiment was conducted to investigate the dynamics of cross-shore sediment transport across a fringing coral reef. The aim was to quantify how a highly bimodal spectrum of high-frequency (sea-swell) and low-frequency (infragravity and seiching) waves that is typically present on coral reef flats, influences the various sediment transport mechanisms. The experiments were conducted in a 55. m wave flume, using a 1:15 scale fringing reef model that had a 1:5 forereef slope, a 14. m long reef flat, and a 1:12 sloping beach. The initial 7. m of reef flat had a fixed bed, whereas the back 7. m of the reef and the beach had a moveable sandy bed. Four seven-hour irregular wave cases were conducted both with and without bottom roughness elements (schematically representing bottom friction by coral roughness), as well as for both low and high still water levels. We observed that the wave energy on the reef flat was partitioned between two primary frequency bands (high and low), and the proportion of energy within each band varied substantially across the reef flat, with the low-frequency waves becoming increasingly important near the shore. The offshore transport of suspended sediment by the Eulerian mean flow was the dominant transport mechanism near the reef crest, but a wide region of onshore transport prevailed on the reef flat where low-frequency waves were very important to the overall transport. Ripples developed over the movable bed and their properties were consistent with the local high-frequency wave orbital excursion lengths despite substantial low-frequency wave motions also present on the reef flat. This study demonstrated that while a proportion of the sediment was transported by bedload and mean flow, the greatest contributions to cross-shore transport were due to the skewness and asymmetry of the high and low-frequency waves.@en

A laboratory experiment was conducted to investigate the dynamics of cross-shore sediment transport across a fringing coral reef. The aim was to quantify how a highly bimodal spectrum of high-frequency (sea-swell) and low-frequency (infragravity and seiching) waves that is typically present on coral reef flats, influences the various sediment transport mechanisms. The experiments were conducted in a 55. m wave flume, using a 1:15 scale fringing reef model that had a 1:5 forereef slope, a 14. m long reef flat, and a 1:12 sloping beach. The initial 7. m of reef flat had a fixed bed, whereas the back 7. m of the reef and the beach had a moveable sandy bed. Four seven-hour irregular wave cases were conducted both with and without bottom roughness elements (schematically representing bottom friction by coral roughness), as well as for both low and high still water levels. We observed that the wave energy on the reef flat was partitioned between two primary frequency bands (high and low), and the proportion of energy within each band varied substantially across the reef flat, with the low-frequency waves becoming increasingly important near the shore. The offshore transport of suspended sediment by the Eulerian mean flow was the dominant transport mechanism near the reef crest, but a wide region of onshore transport prevailed on the reef flat where low-frequency waves were very important to the overall transport. Ripples developed over the movable bed and their properties were consistent with the local high-frequency wave orbital excursion lengths despite substantial low-frequency wave motions also present on the reef flat. This study demonstrated that while a proportion of the sediment was transported by bedload and mean flow, the greatest contributions to cross-shore transport were due to the skewness and asymmetry of the high and low-frequency waves.@en

A laboratory experiment was conducted to investigate the dynamics of cross-shore sediment transport across a fringing coral reef. The aim was to quantify how a highly bimodal spectrum of high-frequency (sea-swell) and low-frequency (infragravity and seiching) waves that is typically present on coral reef flats, influences the various sediment transport mechanisms. The experiments were conducted in a 55. m wave flume, using a 1:15 scale fringing reef model that had a 1:5 forereef slope, a 14. m long reef flat, and a 1:12 sloping beach. The initial 7. m of reef flat had a fixed bed, whereas the back 7. m of the reef and the beach had a moveable sandy bed. Four seven-hour irregular wave cases were conducted both with and without bottom roughness elements (schematically representing bottom friction by coral roughness), as well as for both low and high still water levels. We observed that the wave energy on the reef flat was partitioned between two primary frequency bands (high and low), and the proportion of energy within each band varied substantially across the reef flat, with the low-frequency waves becoming increasingly important near the shore. The offshore transport of suspended sediment by the Eulerian mean flow was the dominant transport mechanism near the reef crest, but a wide region of onshore transport prevailed on the reef flat where low-frequency waves were very important to the overall transport. Ripples developed over the movable bed and their properties were consistent with the local high-frequency wave orbital excursion lengths despite substantial low-frequency wave motions also present on the reef flat. This study demonstrated that while a proportion of the sediment was transported by bedload and mean flow, the greatest contributions to cross-shore transport were due to the skewness and asymmetry of the high and low-frequency waves.@en

A laboratory experiment was conducted to investigate the dynamics of cross-shore sediment transport across a fringing coral reef. The aim was to quantify how a highly bimodal spectrum of high-frequency (sea-swell) and low-frequency (infragravity and seiching) waves that is typically present on coral reef flats, influences the various sediment transport mechanisms. The experiments were conducted in a 55. m wave flume, using a 1:15 scale fringing reef model that had a 1:5 forereef slope, a 14. m long reef flat, and a 1:12 sloping beach. The initial 7. m of reef flat had a fixed bed, whereas the back 7. m of the reef and the beach had a moveable sandy bed. Four seven-hour irregular wave cases were conducted both with and without bottom roughness elements (schematically representing bottom friction by coral roughness), as well as for both low and high still water levels. We observed that the wave energy on the reef flat was partitioned between two primary frequency bands (high and low), and the proportion of energy within each band varied substantially across the reef flat, with the low-frequency waves becoming increasingly important near the shore. The offshore transport of suspended sediment by the Eulerian mean flow was the dominant transport mechanism near the reef crest, but a wide region of onshore transport prevailed on the reef flat where low-frequency waves were very important to the overall transport. Ripples developed over the movable bed and their properties were consistent with the local high-frequency wave orbital excursion lengths despite substantial low-frequency wave motions also present on the reef flat. This study demonstrated that while a proportion of the sediment was transported by bedload and mean flow, the greatest contributions to cross-shore transport were due to the skewness and asymmetry of the high and low-frequency waves.@en

Low-frequency (infragravity) wave dynamics on a fringing coral reef were investigated using the numerical model XBeach (Roelvink et al., 2009). First, the skill of the model was evaluated in one- and two-dimensions based on its predictions of short waves (0.04-0.2. Hz), infragravity waves (0.004-0.04. Hz) and water level measurements (tidal and wave setup) obtained during a 2009 field study at Ningaloo Reef in Western Australia. The model calibration was sensitive to friction coefficients for short waves and current/infragravity bed friction, which were assumed independent in this model study. Although the one-dimensional cross-shore model captured the gradients in the dominant hydrodynamic processes at the site, a high current/IG bed friction coefficient was required. This resulted in an overestimation and a phase lag between the observed and predicted wave setup signal. In the two-dimensional model, a lower (more realistic) current/infragravity wave friction coefficient was required to achieve optimum performance due to the presence of significant reef and lagoon mean flows in the model, which led to reduced setup across the reef. The infragravity waves were found to propagate from the surf zone across the reef in a dominantly cross-shore direction towards the shore, but with substantial frictional damping. The infragravity waves were strongly modulated also over the reef by tidal depth variations, primarily due to the variability in frictional dissipation rates when the total water depth over the reef varied. Two mean wave-driven circulation cells were observed in the study area, with cross-shore flow becoming more alongshore-dominated before exiting the system via the two channels in the reef. The results reveal that short waves dominated bottom stresses on the forereef and near the reef crest; however, inside the lagoon, infragravity waves become increasingly dominant, accounting up to 50% of the combined bottom stresses.@en

Low-frequency (infragravity) wave dynamics on a fringing coral reef were investigated using the numerical model XBeach (Roelvink et al., 2009). First, the skill of the model was evaluated in one- and two-dimensions based on its predictions of short waves (0.04-0.2. Hz), infragravity waves (0.004-0.04. Hz) and water level measurements (tidal and wave setup) obtained during a 2009 field study at Ningaloo Reef in Western Australia. The model calibration was sensitive to friction coefficients for short waves and current/infragravity bed friction, which were assumed independent in this model study. Although the one-dimensional cross-shore model captured the gradients in the dominant hydrodynamic processes at the site, a high current/IG bed friction coefficient was required. This resulted in an overestimation and a phase lag between the observed and predicted wave setup signal. In the two-dimensional model, a lower (more realistic) current/infragravity wave friction coefficient was required to achieve optimum performance due to the presence of significant reef and lagoon mean flows in the model, which led to reduced setup across the reef. The infragravity waves were found to propagate from the surf zone across the reef in a dominantly cross-shore direction towards the shore, but with substantial frictional damping. The infragravity waves were strongly modulated also over the reef by tidal depth variations, primarily due to the variability in frictional dissipation rates when the total water depth over the reef varied. Two mean wave-driven circulation cells were observed in the study area, with cross-shore flow becoming more alongshore-dominated before exiting the system via the two channels in the reef. The results reveal that short waves dominated bottom stresses on the forereef and near the reef crest; however, inside the lagoon, infragravity waves become increasingly dominant, accounting up to 50% of the combined bottom stresses.@en

Low-frequency (infragravity) wave dynamics on a fringing coral reef were investigated using the numerical model XBeach (Roelvink et al., 2009). First, the skill of the model was evaluated in one- and two-dimensions based on its predictions of short waves (0.04-0.2. Hz), infragravity waves (0.004-0.04. Hz) and water level measurements (tidal and wave setup) obtained during a 2009 field study at Ningaloo Reef in Western Australia. The model calibration was sensitive to friction coefficients for short waves and current/infragravity bed friction, which were assumed independent in this model study. Although the one-dimensional cross-shore model captured the gradients in the dominant hydrodynamic processes at the site, a high current/IG bed friction coefficient was required. This resulted in an overestimation and a phase lag between the observed and predicted wave setup signal. In the two-dimensional model, a lower (more realistic) current/infragravity wave friction coefficient was required to achieve optimum performance due to the presence of significant reef and lagoon mean flows in the model, which led to reduced setup across the reef. The infragravity waves were found to propagate from the surf zone across the reef in a dominantly cross-shore direction towards the shore, but with substantial frictional damping. The infragravity waves were strongly modulated also over the reef by tidal depth variations, primarily due to the variability in frictional dissipation rates when the total water depth over the reef varied. Two mean wave-driven circulation cells were observed in the study area, with cross-shore flow becoming more alongshore-dominated before exiting the system via the two channels in the reef. The results reveal that short waves dominated bottom stresses on the forereef and near the reef crest; however, inside the lagoon, infragravity waves become increasingly dominant, accounting up to 50% of the combined bottom stresses.@en

Low-frequency (infragravity) wave dynamics on a fringing coral reef were investigated using the numerical model XBeach (Roelvink et al., 2009). First, the skill of the model was evaluated in one- and two-dimensions based on its predictions of short waves (0.04-0.2. Hz), infragravity waves (0.004-0.04. Hz) and water level measurements (tidal and wave setup) obtained during a 2009 field study at Ningaloo Reef in Western Australia. The model calibration was sensitive to friction coefficients for short waves and current/infragravity bed friction, which were assumed independent in this model study. Although the one-dimensional cross-shore model captured the gradients in the dominant hydrodynamic processes at the site, a high current/IG bed friction coefficient was required. This resulted in an overestimation and a phase lag between the observed and predicted wave setup signal. In the two-dimensional model, a lower (more realistic) current/infragravity wave friction coefficient was required to achieve optimum performance due to the presence of significant reef and lagoon mean flows in the model, which led to reduced setup across the reef. The infragravity waves were found to propagate from the surf zone across the reef in a dominantly cross-shore direction towards the shore, but with substantial frictional damping. The infragravity waves were strongly modulated also over the reef by tidal depth variations, primarily due to the variability in frictional dissipation rates when the total water depth over the reef varied. Two mean wave-driven circulation cells were observed in the study area, with cross-shore flow becoming more alongshore-dominated before exiting the system via the two channels in the reef. The results reveal that short waves dominated bottom stresses on the forereef and near the reef crest; however, inside the lagoon, infragravity waves become increasingly dominant, accounting up to 50% of the combined bottom stresses.@en

Low-frequency (infragravity) wave dynamics on a fringing coral reef were investigated using the numerical model XBeach (Roelvink et al., 2009). First, the skill of the model was evaluated in one- and two-dimensions based on its predictions of short waves (0.04-0.2. Hz), infragravity waves (0.004-0.04. Hz) and water level measurements (tidal and wave setup) obtained during a 2009 field study at Ningaloo Reef in Western Australia. The model calibration was sensitive to friction coefficients for short waves and current/infragravity bed friction, which were assumed independent in this model study. Although the one-dimensional cross-shore model captured the gradients in the dominant hydrodynamic processes at the site, a high current/IG bed friction coefficient was required. This resulted in an overestimation and a phase lag between the observed and predicted wave setup signal. In the two-dimensional model, a lower (more realistic) current/infragravity wave friction coefficient was required to achieve optimum performance due to the presence of significant reef and lagoon mean flows in the model, which led to reduced setup across the reef. The infragravity waves were found to propagate from the surf zone across the reef in a dominantly cross-shore direction towards the shore, but with substantial frictional damping. The infragravity waves were strongly modulated also over the reef by tidal depth variations, primarily due to the variability in frictional dissipation rates when the total water depth over the reef varied. Two mean wave-driven circulation cells were observed in the study area, with cross-shore flow becoming more alongshore-dominated before exiting the system via the two channels in the reef. The results reveal that short waves dominated bottom stresses on the forereef and near the reef crest; however, inside the lagoon, infragravity waves become increasingly dominant, accounting up to 50% of the combined bottom stresses.@en

The presence of large bottom roughness, such as that formed by benthic organisms on coral reef flats, has important implications for the size, concentration, and transport of suspended sediment in coastal environments. A 3 week field study was conducted in approximately 1.5 m water depth on the reef flat at Ningaloo Reef, Western Australia, to quantify the cross-reef hydrodynamics and suspended sediment dynamics over the large bottom roughness (∼20–40 cm) at the site. A logarithmic mean current profile consistently developed above the height of the roughness; however, the flow was substantially reduced below the height of the roughness (canopy region). Shear velocities inferred from the logarithmic profile and Reynolds stresses measured at the top of the roughness, which are traditionally used in predictive sediment transport formulations, were similar but much larger than that required to suspend the relatively coarse sediment present at the bed. Importantly, these stresses did not represent the stresses imparted on the sediment measured in suspension and are therefore not relevant to the description of suspended sediment transport in systems with large bottom roughness. Estimates of the bed shear stresses that accounted for the reduced near-bed flow in the presence of large roughness vastly improved the relationship between the predicted and observed grain sizes that were in suspension. Thus, the impact of roughness, not only on the overlying flow but also on bed stresses, must be accounted for to accurately estimate suspended sediment transport in regions with large bottom roughness, a common feature of many shallow coastal ecosystems.@en