Small shallow cumulus clouds (less-than 1 km) over the tropical oceans appear to possess the ability to self-organize into mesoscale (10–100 km) patterns. To better understand the processes leading to such self-organized convection, we present Cloud Botany, an ensemble of 103 large-eddy simulations on domains of 150 km, produced by the Dutch Atmospheric Large Eddy Simulation model on supercomputer Fugaku. Each simulation is run in an idealized, fixed, larger-scale environment, controlled by six free parameters. We vary these over characteristic ranges for the winter trades, including parameter combinations observed during the EUREC4A (Elucidating the role of clouds–circulation coupling in climate) field campaign. In contrast to simulation setups striving for maximum realism, Cloud Botany provides a platform for studying idealized, and therefore more clearly interpretable causal relationships between conditions in the larger-scale environment and patterns in mesoscale, self-organized shallow convection. We find that any simulation that supports cumulus clouds eventually develops mesoscale patterns in their cloud fields. We also find a rich variety in these patterns as our control parameters change, including cold pools lined by cloudy arcs, bands of cross-wind clouds and aggregated patches, sometimes topped by thin anvils. Many of these features are similar to cloud patterns found in nature. The published data set consists of raw simulation output on full 3D grids and 2D cross-sections, as well as post-processed quantities aggregated over the vertical (2D), horizontal (1D) and all spatial dimensions (time-series). The data set is directly accessible from Python through the use of the EUREC4A intake catalog.

In this study, we investigate uncertainties in a large eddy simulation of the atmosphere, employing modern uncertainty quantification methods that have hardly been used yet in this context. When analysing the uncertainty of model results, one can distinguish between uncertainty related to physical parameters whose values are not exactly known, and uncertainty related to modelling choices such as the selection of numerical discretization methods, of the spatial domain size and resolution, and the use of different model formulations. While the former kind is commonly studied e.g. with forward uncertainty propagation, we explore the use of such techniques to also assess the latter kind. From a climate modelling perspective, uncertainties in the convective response and cloud formation are of particular interest, since these affect the cloud-climate feedback, one of the dominant sources of uncertainty in current climate models. Therefore we analyse the DALES model in the RICO case, a well-studied convection benchmark. We use the VECMA toolkit for uncertainty propagation, assessing uncertainties stemming from physical parameters as well as from modelling choices. We find substantial uncertainties due to small random initial state perturbations, and that the choice of advection scheme is the most influential of the modelling choices we assessed. This article is part of the theme issue 'Reliability and reproducibility in computational science: implementing verification, validation and uncertainty quantification in silico'.